PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G27330.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 509aa    MW: 53669.6 Da    PI: 6.3809
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G27330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.6e-1673117147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT eE+ l+++a +++G   W++I +++g ++t+ q++s+ qk+
  OMERI02G27330.1  73 REKWTDEEHRLFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 117
                      789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-1667121IPR009057Homeodomain-like
PROSITE profilePS5129420.80268122IPR017930Myb domain
TIGRFAMsTIGR015572.3E-1571120IPR006447Myb domain, plants
SMARTSM007172.2E-1372120IPR001005SANT/Myb domain
PfamPF002496.3E-1473116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-973113IPR009057Homeodomain-like
CDDcd001673.08E-1075118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MEMACLQGNA MATDENGADD RASGESTVDH LRSHMNYGDM DLSGEEHVPK IVFLPCTLAP  60
DQARKPYTIT KQREKWTDEE HRLFLEALQL HGRAWRRIQE HIGTKTAVQI RSHAQKFFSK  120
VVRESSGSNT GSGGTSAAAA AAIQIPPPRP KRKPAHPYPR KVDGAAKKHV PALRQLEKPP  180
LRMQSLSEQE EGSPTSVLTA AQMGTEALGG GFSNNSSGSG SLAPSAAGTD EHVDGGGSPA  240
SSVDREDGCL SPSIPTAELA MQAPNTKMST ATTDAKEASS EASVFRLFGK SVVVKDSDQL  300
HLLSGSNITT NASVERATRN ILVPSFAAAP EGSSSNPWPS SMQQFLYFLP RSDGFAAQPV  360
MPWFSYNGSL PCALFYPAAA AAAAANQQCH RDSEGVEFRS SQREGSLTGS NTASSVVLGS  420
SAAVAAAATV AQNSDVAESR GQGNSRDSDA AAAAASQRLT KCESSASVTL LQRGFMPYKR  480
CVAESELLRS EAAGGEEAVA DGELTRLCL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117260.0AK111726.1 Oryza sativa Japonica Group cDNA clone:J023036F23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623484.10.0protein REVEILLE 1 isoform X2
TrEMBLA0A0E0CPW30.0A0A0E0CPW3_9ORYZ; Uncharacterized protein
STRINGOMERI02G26510.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.12e-33MYB_related family protein