PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI02G26850.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 395aa MW: 40371.2 Da PI: 8.9416 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.9 | 2.5e-39 | 88 | 149 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss OMERI02G26850.2 88 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 149 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-31 | 84 | 146 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.7E-33 | 90 | 146 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.059 | 92 | 146 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 94 | 130 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009639 | Biological Process | response to red or far red light | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MANLLFFVQI YARIGHILLA LCGLGLVKPM EEMLMGANPN PNGSSNQPPP PPSSAASAQR 60 PIAPPAAGAA AAGAGAGAGT ERRARPQKEK ALNCPRCNST NTKFCYYNNY SLQQPRYFCK 120 TCRRYWTEGG SLRNVPVGGG SRKNKRSSSS VVPSAAASAS TSAAVSGSVP VGLAAKNPKL 180 MHEGAQDLNL AFPHHHGRAL QPPEFTAFPS LESSSVCNPG GNLAAANGAG GRGSVGAFSA 240 MELLRSTGCY VPLPQMAPLG MPAEYAAAGF HLGEFRMPPP PQQQQQQQQQ QAQTLLGFSL 300 DTHGTGAGGG SGVFGACNAG LQESAAGRLL FPFEDLKPVV SAAAGDANSG GDHQYDHGKN 360 QGGGGGVIGG HETPGFWNSS MIGNGSSNGG GGGSW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028130 | 0.0 | AB028130.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627550.1 | 1e-169 | dof zinc finger protein 2 isoform X1 | ||||
Swissprot | B9F1L8 | 1e-170 | DOF2_ORYSJ; Dof zinc finger protein 2 | ||||
TrEMBL | A0A0E0CPQ4 | 0.0 | A0A0E0CPQ4_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI02G26080.2 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2369 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 1e-42 | Dof family protein |
Publications ? help Back to Top | |||
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