PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G26740.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 634aa    MW: 65737.1 Da    PI: 8.9102
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G26740.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-0595117123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k F r  nL+ H r H
  OMERI02G26740.2  95 FVCEVCNKGFQREQNLQLHRRGH 117
                      89*******************88 PP
2zf-C2H211.50.00094192214123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k++  +s+ k H + +
  OMERI02G26740.2 192 WKCDKCSKRYAVQSDWKAHSKIC 214
                      58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.9E-694117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.55E-794117No hitNo description
PROSITE profilePS5015711.09495117IPR007087Zinc finger, C2H2
SMARTSM003550.004195117IPR015880Zinc finger, C2H2-like
PfamPF121714.2E-595117IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-4180213IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.55E-7187212No hitNo description
SMARTSM00355140192212IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MASNSSAAAV AALFGIRDGD HEDQIKPLFA QQQQHHHHQP PMAPSNAAAA ASAAGSAAGQ  60
ASAAAPPAKK KRTLPDPDAE VIALSPKTLL ATNRFVCEVC NKGFQREQNL QLHRRGHNLP  120
WKLKQKNPLQ AQRRRVYLCP EPTCVHHDPS RALGDLTGIK KHFCRKHGEK NATGDLTGIK  180
KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH SKICGTREYR CDCGTLFSRR DSFITHRAFC  240
DALAQESARL PPAAAGHLYG SAGAANMALS LSQVGSHLAS TLQDHGHHHH HGASPDLLRF  300
GGSGGGAMAA RLEHLLSSSS ASAFRPLPPP PQQQSPAPFL LGAAPQGFGD GGDGSGPHGF  360
LQGKPFHGLM QLPDLQGNGT GGPSPSGPGL YNLGYIANSA NSSGTSSHGH ASQGQMTNTD  420
QFSEGGGGGG GGGGGSETSA AALFGAGGNF SGGEHHQVSP AGMYANDHAM MLPQMSATAL  480
LQKAAQMGSS TSSANGAGAS VFGGGFAGSS APSSIPHGRG TMVDQGQMHL QSLMNSLAGG  540
GNADHQGMFG SGSMIDPRLY DMDQHEVKFS LQRGGGGDGD VTRDFLGVGG GGFMRGMSMA  600
RGDQHHGGGG SDMHGTLEAE MKSASSSFNG GRMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-34188250365Zinc finger protein JACKDAW
5b3h_F8e-34188250365Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1206030.0AK120603.1 Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626115.10.0protein indeterminate-domain 4, chloroplastic
RefseqXP_015626116.10.0protein indeterminate-domain 4, chloroplastic
RefseqXP_015626117.10.0protein indeterminate-domain 4, chloroplastic
RefseqXP_015626118.10.0protein indeterminate-domain 4, chloroplastic
TrEMBLA0A0E0CPN60.0A0A0E0CPN6_9ORYZ; Uncharacterized protein
STRINGOMERI02G25950.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.12e-98indeterminate(ID)-domain 12