PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G25450.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 261aa    MW: 28616.6 Da    PI: 4.9606
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G25450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.7e-1865118456
                      -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ft+eq++ Le+ F+    ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  OMERI02G25450.1  65 KRRFTEEQVRSLETTFHArRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 118
                      458**************8899********************************9 PP
2HD-ZIP_I/II122.81.6e-3963156193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      e+krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kq+E+dy+aL+++ydal+++ e+L++e+ +L+++++e
  OMERI02G25450.1  63 ERKRRFTEEQVRSLETTFHARRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRAQYDALHSRVESLKQEKLALAAQVDE 156
                      69*****************9999******************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.21E-1756121IPR009057Homeodomain-like
PROSITE profilePS5007117.21659120IPR001356Homeobox domain
SMARTSM003892.9E-1762124IPR001356Homeobox domain
CDDcd000861.32E-1664121No hitNo description
Gene3DG3DSA:1.10.10.601.9E-1865127IPR009057Homeodomain-like
PfamPF000461.5E-1565118IPR001356Homeobox domain
PRINTSPR000316.5E-791100IPR000047Helix-turn-helix motif
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PRINTSPR000316.5E-7100116IPR000047Helix-turn-helix motif
PfamPF021832.0E-16120161IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MESDCQFLVA PPPPPPQPHM YYDTAAAAVD EAQFLRQMVA AADHHAAAAG RGGGDGVGGG  60
GGERKRRFTE EQVRSLETTF HARRAKLEPR EKAELARELG LQPRQVAIWF QNKRARWRSK  120
QIEHDYAALR AQYDALHSRV ESLKQEKLAL AAQVDELRGK LNERQDQSGS CDGGAEGDDD  180
EKRNSVMNAS RSSSGLVEEN VSCLAVPVVD VSDDGSAACG GSSYEYNHHL DYLGGGQLPD  240
PFCGMPDLWE TWPLVEWNAV A
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0636850.0AK063685.1 Oryza sativa Japonica Group cDNA clone:001-119-F01, full insert sequence.
GenBankEU8475150.0EU847515.1 Oryza sativa Japonica Group clone OsHD6B homeobox leucine zipper protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624138.11e-144homeobox-leucine zipper protein HOX24
SwissprotA2X7U11e-147HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBLA0A0E0CP510.0A0A0E0CP51_9ORYZ; Uncharacterized protein
STRINGOMERI02G24600.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.17e-34homeobox 7