PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G25330.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 427aa    MW: 44811.6 Da    PI: 8.4996
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G25330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.9e-19346380135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  OMERI02G25330.1 346 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 380
                      *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.308340376IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.66E-14340401No hitNo description
SMARTSM004017.4E-18340394IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-15344378IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.20E-14345387No hitNo description
PfamPF003203.0E-17346380IPR000679Zinc finger, GATA-type
PROSITE patternPS003440346371IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MTHQALISST PPSAFSPASH FLHAASSSSP SLSSHAAAVA MSSFAHHHHG SLVEKDGRMS  60
ALRSSLRPYE AAEEMAAAAA AGGPVAAWGA VERGAGMMGD GFSVEDLLDL EELCEVDRDG  120
GEQGEAAAPV AAVEKERSSD SHGSSVVSYE PMPLLPPVMD LPAHDVEELE WVSRIMDDSL  180
AELPLLQLPS AAAALAACGK PQHRRPQEGA ASALLDPMRT PTICALSTEA LVPVKSRRSK  240
RSRASVWSLS GAPLSDSTSS SSTATTSSCS SSASFSPFLQ YVDFPALVAS DLLDEQPRSK  300
KSKHGKNGKQ KPKKRGRKPK HQQPPHLAAA AAAGGAALPA TGDRRCSHCG VQKTPQWRAG  360
PEGAKTLCNA CGVRYKSGRL LPEYRPACSP TFVSSLHSNS HRKVLEMRRK KETPVIVAAA  420
APAVASF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1094770.0AK109477.1 Oryza sativa Japonica Group cDNA clone:001-200-C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623357.10.0GATA transcription factor 6
TrEMBLA0A0E0CP360.0A0A0E0CP36_9ORYZ; GATA transcription factor
STRINGOMERI02G24510.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-39GATA transcription factor 5