PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI02G24320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 694aa MW: 74749.3 Da PI: 6.8791 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.6 | 2.3e-23 | 120 | 221 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + OMERI02G24320.1 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldyaADPPVQ--TVVAKDVHGVAWNFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RG 209 89*****************************96555555..8************************************************..34 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++ l+v+++r+ OMERI02G24320.1 210 DGGDLHVGIRRA 221 88999*****97 PP | |||||||
2 | Auxin_resp | 118.2 | 6.9e-39 | 271 | 354 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ as +++FevvY+Prast+eF+v+++ v++a++v++++GmRfkmafetedss++++ +Gtv+gv+ +dp+rWp+S+Wr+L+ OMERI02G24320.1 271 AARLASGGQPFEVVYYPRASTPEFCVRAAAVRAAMRVQWCPGMRFKMAFETEDSSRISWfMGTVAGVQVADPIRWPQSPWRLLQ 354 6788999***************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.7E-37 | 113 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.89E-29 | 116 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.71E-22 | 119 | 220 | No hit | No description |
PROSITE profile | PS50863 | 12.689 | 120 | 222 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-21 | 120 | 221 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-20 | 120 | 222 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.2E-33 | 271 | 354 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 14.96 | 608 | 688 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 694 aa Download sequence Send to blast |
MITFADLAEP APGAERCVDR QLWLACAGGM CTVPPVGAAV YYFPQGHAEH ALGLAAPELS 60 AARVPALVPC RVASVRYMAD PDTDEVFARI RLVPLHAAED GDVEEDGAAA GEEHEKPASF 120 AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YAADPPVQTV VAKDVHGVAW NFRHIYRGTP 180 RRHLLTTGWS TFVNQKKLVA GDSIVFLRGD GGDLHVGIRR AKRGFCGGGG GPEEASLPGW 240 DQYGGLMRGN ASPCAAAKGR GKVRAEDVVE AARLASGGQP FEVVYYPRAS TPEFCVRAAA 300 VRAAMRVQWC PGMRFKMAFE TEDSSRISWF MGTVAGVQVA DPIRWPQSPW RLLQVTWDEP 360 DLLQNVKRVS PWLVELVSSM PAIHLSSFSP PRKKPRIPAY PEFPFEGQLL NPAFPPNPLA 420 HGHHHYHHNH SSFFPFPDVS APAGIQGARH AQFGPSLSDL HLTHLQSSLM YPGLRRPDHV 480 GPTPIPPPRI STDLTMGSSP PARALSMGAK KPDDAKPPGL MLFGQRILTE RQMSLSGSAG 540 GTTSPAATGN SSLNWNTEKG GANASEGSGS GSGSGSGVIQ NSPTDNTSSE RLQWFRENST 600 VSELGLEPGQ CKVFIESDTV GRNLDLSSLA SFEQLYGRLS EMFCIDSAEL RSRVLYRGDT 660 GEVKHAGDEP FSEFIKLARR LTILTDAGSD NLGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-81 | 18 | 375 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243230 | 0.0 | AK243230.1 Oryza sativa Japonica Group cDNA, clone: J100044L04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622752.1 | 0.0 | auxin response factor 8 | ||||
Swissprot | Q6K223 | 0.0 | ARFH_ORYSJ; Auxin response factor 8 | ||||
TrEMBL | A0A0E0CNP2 | 0.0 | A0A0E0CNP2_9ORYZ; Auxin response factor | ||||
STRING | OMERI02G23420.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |