PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G24100.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 294aa    MW: 32059.4 Da    PI: 7.2708
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G24100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.61.4e-50101471128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrF P+deelv++yL+kkv+++++   +++ evd++  ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ev  
  OMERI02G24100.1  10 LPPGFRFFPSDEELVCHYLHKKVANERIAQGSTLVEVDLHAREPWELPEVAKLTASEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDREVRG 103
                      79*************************999889***************87778889************************************99 PP

              NAM  95 k..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +          ++++vg++ktLvfy+grap+g+kt Wvmhe+rl
  OMERI02G24100.1 104 SssssssssssSRAVVGMRKTLVFYQGRAPNGVKTGWVMHEFRL 147
                      866665555544444***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-587166IPR003441NAC domain
PROSITE profilePS5100557.02810166IPR003441NAC domain
PfamPF023651.3E-2711147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MALREIESTL PPGFRFFPSD EELVCHYLHK KVANERIAQG STLVEVDLHA REPWELPEVA  60
KLTASEWYFF SFRDRKYATG SRTNRATKTG YWKATGKDRE VRGSSSSSSS SSSSSRAVVG  120
MRKTLVFYQG RAPNGVKTGW VMHEFRLDSP HSQPREDWVL CRVFQKRKGD GDGPQDSGGA  180
ASPTFTGSMS TTTLSQLQPP DHRRHAAAAA GGYYVDTQQL ATGYSAAAGF ANPTQPAVPH  240
YQYGGAVIGF PEEFGGGGGV SDEYGFGTYL DLGFDLDDTA SVLGGIRSFA QGWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-47516710169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1051220.0AK105122.1 Oryza sativa Japonica Group cDNA clone:001-101-C03, full insert sequence.
GenBankAP0068470.0AP006847.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, fosmid clone:OSJNOa148N02.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648848.11e-139PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ9FLJ22e-59NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0E0CNL60.0A0A0E0CNL6_9ORYZ; Uncharacterized protein
STRINGOMERI02G23220.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.16e-74NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]