PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G21400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 417aa    MW: 44113.1 Da    PI: 7.9501
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G21400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.9e-1867114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++l+ +++q+G g+W++ + + g++R++k+c++rw +yl
  OMERI02G21400.1  67 KGPWTPEEDQKLLAYIEQHGHGCWRSLPTKAGLRRCGKSCRLRWTNYL 114
                      79********************************************97 PP

2Myb_DNA-binding54.13.6e-17120165148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  OMERI02G21400.1 120 RGKFTLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 165
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-2559117IPR009057Homeodomain-like
PROSITE profilePS5129418.74162114IPR017930Myb domain
SuperFamilySSF466894.77E-3064161IPR009057Homeodomain-like
SMARTSM007172.5E-1566116IPR001005SANT/Myb domain
PfamPF002491.6E-1667114IPR001005SANT/Myb domain
CDDcd001671.27E-1169114No hitNo description
PROSITE profilePS5129426.333115169IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-26118169IPR009057Homeodomain-like
SMARTSM007175.8E-17119167IPR001005SANT/Myb domain
PfamPF002492.3E-16120165IPR001005SANT/Myb domain
CDDcd001671.07E-11122165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MPLVDWTSGP WPPNHCTGGH YCTRSISGKK SSRLSRSGGL GDLEWLIDRS ERMGRSPCCE  60
KEAGLKKGPW TPEEDQKLLA YIEQHGHGCW RSLPTKAGLR RCGKSCRLRW TNYLRPDIKR  120
GKFTLQEEQT IIQLHALLGN RWSAIATHLP KRTDNEIKNY WNTHLKKRLA KMGIDPVTHK  180
PRVEADVAGG GGGXXXXXXX XXXXXXAGGG GGGAAGGGAR SRAAAHLSHT AQWESARLEA  240
EARLAREAKL RALASPPATA TAALSGVDSP TSTLSFSESA LFGAGSAAPD IHGAARAAPA  300
AAVQAVQSSY GEACQEHHFG GATAETSFAG AGTLAGVLLD CSVTGADQRF AARTEACSGE  360
LQGEDDDDKG YWNSILNMVN SSMSSSSSSL TSEVVTDTEM FLPAAAAAAA SATPVEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27651695108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061610.0AP006161.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1267B06.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624862.10.0transcription factor MYB106
SwissprotQ9LXF11e-105MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A0E0CMG10.0A0A0E0CMG1_9ORYZ; Uncharacterized protein
STRINGOBART02G21860.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-85myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]