PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI02G21400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 417aa MW: 44113.1 Da PI: 7.9501 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.2 | 1.9e-18 | 67 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++q+G g+W++ + + g++R++k+c++rw +yl OMERI02G21400.1 67 KGPWTPEEDQKLLAYIEQHGHGCWRSLPTKAGLRRCGKSCRLRWTNYL 114 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.1 | 3.6e-17 | 120 | 165 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l OMERI02G21400.1 120 RGKFTLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 165 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-25 | 59 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.741 | 62 | 114 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.77E-30 | 64 | 161 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-15 | 66 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-16 | 67 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.27E-11 | 69 | 114 | No hit | No description |
PROSITE profile | PS51294 | 26.333 | 115 | 169 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-26 | 118 | 169 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-17 | 119 | 167 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-16 | 120 | 165 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.07E-11 | 122 | 165 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MPLVDWTSGP WPPNHCTGGH YCTRSISGKK SSRLSRSGGL GDLEWLIDRS ERMGRSPCCE 60 KEAGLKKGPW TPEEDQKLLA YIEQHGHGCW RSLPTKAGLR RCGKSCRLRW TNYLRPDIKR 120 GKFTLQEEQT IIQLHALLGN RWSAIATHLP KRTDNEIKNY WNTHLKKRLA KMGIDPVTHK 180 PRVEADVAGG GGGXXXXXXX XXXXXXAGGG GGGAAGGGAR SRAAAHLSHT AQWESARLEA 240 EARLAREAKL RALASPPATA TAALSGVDSP TSTLSFSESA LFGAGSAAPD IHGAARAAPA 300 AAVQAVQSSY GEACQEHHFG GATAETSFAG AGTLAGVLLD CSVTGADQRF AARTEACSGE 360 LQGEDDDDKG YWNSILNMVN SSMSSSSSSL TSEVVTDTEM FLPAAAAAAA SATPVEF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 65 | 169 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006161 | 0.0 | AP006161.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1267B06. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624862.1 | 0.0 | transcription factor MYB106 | ||||
Swissprot | Q9LXF1 | 1e-105 | MYB16_ARATH; Transcription factor MYB16 | ||||
TrEMBL | A0A0E0CMG1 | 0.0 | A0A0E0CMG1_9ORYZ; Uncharacterized protein | ||||
STRING | OBART02G21860.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 1e-85 | myb domain protein 16 |
Publications ? help Back to Top | |||
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