PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI02G21390.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 324aa MW: 35825.4 Da PI: 7.7217

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI02G21390.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.4	1.4e-53	37	163	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL +k+++ +++++ e+d++k+ePwdLp++++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkd+e+++ OMERI02G21390.1 37 LPPGFRFHPTDEELITHYLLRKAADPAGFAARAVGEADLNKCEPWDLPSRATMGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKDREIFR 130 79*******************9999666689***********988899************************************ PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfy+grap+g kt Wvmheyr+ OMERI02G21390.1 131 -GKALVGMKKTLVFYTGRAPRGGKTGWVMHEYRI 163 .99***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-64	24	185	IPR003441	NAC domain
PROSITE profile	PS51005	59.801	37	185	IPR003441	NAC domain
Pfam	PF02365	2.2E-29	38	163	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MRLARQQQQQ QVVVAATMEH DVHHHRQMMQ QQQEMDLPPG FRFHPTDEEL ITHYLLRKAA 60 DPAGFAARAV GEADLNKCEP WDLPSRATMG EKEWYFFCVK DRKYPTGLRT NRATESGYWK 120 ATGKDREIFR GKALVGMKKT LVFYTGRAPR GGKTGWVMHE YRIHGKHAAS NSKDQEWVLC 180 RVFKKSLELA PAAAAAAGRR GAGAGTDVGP SSMPMADDVG QFLDTPYLLP AADPADHLAM 240 SSASPFLEAL QMQYVQDAAA AGGAGMVHEL LMGGGWYCNK GERERLSGAS QDTGLTSSEV 300 NPGEISSSSR QQRMDHHDAS LWAY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	34	185	14	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	34	185	14	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	34	185	14	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	34	185	14	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-55	34	185	17	168	NAC domain-containing protein 19
3swm_B	1e-55	34	185	17	168	NAC domain-containing protein 19
3swm_C	1e-55	34	185	17	168	NAC domain-containing protein 19
3swm_D	1e-55	34	185	17	168	NAC domain-containing protein 19
3swp_A	1e-55	34	185	17	168	NAC domain-containing protein 19
3swp_B	1e-55	34	185	17	168	NAC domain-containing protein 19
3swp_C	1e-55	34	185	17	168	NAC domain-containing protein 19
3swp_D	1e-55	34	185	17	168	NAC domain-containing protein 19
4dul_A	1e-55	34	185	14	165	NAC domain-containing protein 19
4dul_B	1e-55	34	185	14	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT834765	0.0	CT834765.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA021O03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623390.1	0.0	NAC domain-containing protein 92 isoform X2
Swissprot	Q9FLJ2	2e-88	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0E0CMF9	0.0	A0A0E0CMF9_9ORYZ; Uncharacterized protein
STRING	OS02T0579000-01	0.0	(Oryza sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	5e-85	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]