PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G21010.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 377aa    MW: 39808 Da    PI: 7.1569
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G21010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.56.3e-07172193223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       C +Cgk F+r  nL+ H+r H
  OMERI02G21010.1 172 FCDICGKGFRRDANLRMHMRAH 193
                      6*******************99 PP
2zf-C2H212.50.00046257281123
                      EEETTTT..EEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCg..ksFsrksnLkrHirtH 23 
                      y C+ Cg  k+F    +L++H+r +
  OMERI02G21010.1 257 YACERCGgkKRFAVLADLRSHLRHC 281
                      89********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.24E-6168193No hitNo description
SMARTSM003550.0019171193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.614171193IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-6173193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280173193IPR007087Zinc finger, C2H2
SMARTSM0035573219252IPR015880Zinc finger, C2H2-like
SMARTSM0035517257280IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MKSTTHLLAG GGGGSVAPPT AATAPTLAME VGDPSGALVG GAGGAGAGGG DGDARDALLR  60
LVALGDRMAA VRRRIAASIS GESGPLSSSD IHSVSSEISS AAHLVVLNAA SLLSSTVASL  120
PAPPPPPATV QELPPVVVSV PQELPQEAAK GDGDFDVVEL DASELLAEHV HFCDICGKGF  180
RRDANLRMHM RAHGDRFKTL DALSRPGQPK PPAGREVRFS CPYAGCNRNR AHRRFRPLKS  240
AVCARNHFRR SHCPKLYACE RCGGKKRFAV LADLRSHLRH CGEEAQWRCS CGTTFSRKDK  300
LFGHLALFEG HTPAIAEPNK GVATAAAEAS ISMMEEGGVE ANCDREEDEE GGFDPKFFQE  360
WMEELRGGAV APNWPIV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056990.0AP005699.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0046L23.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627485.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A0E0CMA60.0A0A0E0CMA6_9ORYZ; Uncharacterized protein
STRINGOPUNC02G19290.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125503236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.31e-69C2H2 family protein