PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI02G20780.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 348aa MW: 37366.6 Da PI: 5.9088 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.3 | 2.6e-18 | 152 | 206 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Le+ F+++++++ +++ +LA++l+L rqV vWFqNrRa+ k OMERI02G20780.3 152 RKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTK 206 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 125.1 | 3.1e-40 | 152 | 243 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL++e +eLr +l+ OMERI02G20780.3 152 RKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQRELAELRGALR 243 69**************************************************************************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-17 | 134 | 206 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.13E-17 | 144 | 209 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.135 | 148 | 208 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-16 | 150 | 212 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.2E-15 | 152 | 206 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.42E-16 | 152 | 209 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 183 | 206 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 3.5E-18 | 208 | 252 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.6E-10 | 208 | 242 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MELELSLGDS LAPVKATVAP TPVLTPTCMG DEEDLELVLG VRAARRDEQD DQTTCTQSSE 60 EAMEGEEDET RPHGEASVES LSFPLFVSSA ETGSANSEMC TRGFDVNTRP ADGGAEAGRP 120 SSPSSMQEVS TRQQVADQEA ADDEENGGGG ARKKLRLSKE QSSFLEDSFK EHSTLTPKQK 180 SDLANRLNLR PRQVEVWFQN RRARTKLKQT EVDCEHLKRC CERLTRENRR LQRELAELRG 240 ALRTTSSSYP PLYGLHHLPA AAGTVFRVCP SCEHSKVVAA AASESFSPRV FAGGGAHAAI 300 TAAAAVSSPA AGSPPSPAAL FGARRPHFGP FAAAVIPPVL RRQPSATS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 200 | 208 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064118 | 0.0 | AK064118.1 Oryza sativa Japonica Group cDNA clone:002-102-B08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626174.1 | 0.0 | homeobox-leucine zipper protein HOX7 isoform X1 | ||||
Swissprot | A2X674 | 0.0 | HOX7_ORYSI; Homeobox-leucine zipper protein HOX7 | ||||
TrEMBL | A0A0E0CM71 | 0.0 | A0A0E0CM71_9ORYZ; Uncharacterized protein | ||||
STRING | ONIVA02G23130.1 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 8e-52 | homeobox from Arabidopsis thaliana |