PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI02G20780.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 379aa MW: 40498.1 Da PI: 6.5133 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.2 | 2.9e-18 | 183 | 237 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Le+ F+++++++ +++ +LA++l+L rqV vWFqNrRa+ k OMERI02G20780.2 183 RKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTK 237 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 124.9 | 3.6e-40 | 183 | 274 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL++e +eLr +l+ OMERI02G20780.2 183 RKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQRELAELRGALR 274 69**************************************************************************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-17 | 165 | 237 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.38E-17 | 175 | 240 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.135 | 179 | 239 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-16 | 181 | 243 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.20E-17 | 183 | 240 | No hit | No description |
Pfam | PF00046 | 1.4E-15 | 183 | 237 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 214 | 237 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 3.5E-18 | 239 | 283 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.8E-10 | 239 | 273 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MYPGNGGAPP SSSLAGVRLP ARVNDRLAEY PSCLSTFLGD SLAPVKATVA PTPVLTPTCM 60 GDEEDLELVL GVRAARRDEQ DDQTTCTQSS EEAMEGEEDE TRPHGEASVE SLSFPLFVSS 120 AETGSANSEM CTRGFDVNTR PADGGAEAGR PSSPSSMQEV STRQQVADQE AADDEENGGG 180 GARKKLRLSK EQSSFLEDSF KEHSTLTPKQ KSDLANRLNL RPRQVEVWFQ NRRARTKLKQ 240 TEVDCEHLKR CCERLTRENR RLQRELAELR GALRTTSSSY PPLYGLHHLP AAAGTVFRVC 300 PSCEHSKVVA AAASESFSPR VFAGGGAHAA ITAAAAVSSP AAGSPPSPAA LFGARRPHFG 360 PFAAAVIPPV LRRQPSATS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 231 | 239 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064118 | 0.0 | AK064118.1 Oryza sativa Japonica Group cDNA clone:002-102-B08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626174.1 | 0.0 | homeobox-leucine zipper protein HOX7 isoform X1 | ||||
Swissprot | A2X674 | 0.0 | HOX7_ORYSI; Homeobox-leucine zipper protein HOX7 | ||||
TrEMBL | A0A0E0CM70 | 0.0 | A0A0E0CM70_9ORYZ; Uncharacterized protein | ||||
STRING | ONIVA02G23130.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12894 | 30 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-51 | homeobox from Arabidopsis thaliana |