PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G20780.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 369aa    MW: 39566.1 Da    PI: 6.6006
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G20780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-18173227256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq   Le+ F+++++++ +++ +LA++l+L  rqV vWFqNrRa+ k
  OMERI02G20780.1 173 RKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTK 227
                      788899***********************************************98 PP
2HD-ZIP_I/II1253.4e-40173264192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlskeq+++LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL++e +eLr +l+
  OMERI02G20780.1 173 RKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQRELAELRGALR 264
                      69**************************************************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-17155227IPR009057Homeodomain-like
SuperFamilySSF466891.34E-17165230IPR009057Homeodomain-like
PROSITE profilePS5007117.135169229IPR001356Homeobox domain
SMARTSM003892.1E-16171233IPR001356Homeobox domain
CDDcd000861.51E-16173230No hitNo description
PfamPF000461.3E-15173227IPR001356Homeobox domain
PROSITE patternPS000270204227IPR017970Homeobox, conserved site
PfamPF021831.8E-10229263IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.5E-18229273IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MIDPPPPPWP SPGWRSATAS LLLVHPRGGD SLAPVKATVA PTPVLTPTCM GDEEDLELVL  60
GVRAARRDEQ DDQTTCTQSS EEAMEGEEDE TRPHGEASVE SLSFPLFVSS AETGSANSEM  120
CTRGFDVNTR PADGGAEAGR PSSPSSMQEV STRQQVADQE AADDEENGGG GARKKLRLSK  180
EQSSFLEDSF KEHSTLTPKQ KSDLANRLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEHLKR  240
CCERLTRENR RLQRELAELR GALRTTSSSY PPLYGLHHLP AAAGTVFRVC PSCEHSKVVA  300
AAASESFSPR VFAGGGAHAA ITAAAAVSSP AAGSPPSPAA LFGARRPHFG PFAAAVIPPV  360
LRRQPSATS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221229RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641180.0AK064118.1 Oryza sativa Japonica Group cDNA clone:002-102-B08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626174.10.0homeobox-leucine zipper protein HOX7 isoform X1
SwissprotA2X6740.0HOX7_ORYSI; Homeobox-leucine zipper protein HOX7
TrEMBLA0A0E0CM690.0A0A0E0CM69_9ORYZ; Uncharacterized protein
STRINGONIVA02G23130.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-51homeobox from Arabidopsis thaliana