PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI02G19460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 882aa MW: 97401.8 Da PI: 9.3725 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 71 | 2.1e-22 | 790 | 870 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e++ Li++r em+e++++ k ++ lWee+s+ m ++g++r+p qCk+ w +l ++y++ k+ e++ ++t+pyf +++ OMERI02G19460.1 790 KWKPEEIKSLIQMRGEMNEQFQTVKGRMVLWEEISSSMLSQGISRTPAQCKSLWTSLVQKYEESKKDEES-----VKTWPYFLDMD 870 7*****************************************************************9998.....689******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.60.15.10 | 1.7E-65 | 80 | 330 | IPR001279 | Metallo-beta-lactamase |
SuperFamily | SSF56281 | 7.94E-71 | 81 | 506 | IPR001279 | Metallo-beta-lactamase |
SMART | SM00849 | 7.6E-24 | 93 | 290 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF12706 | 1.3E-9 | 104 | 240 | IPR001279 | Metallo-beta-lactamase |
Pfam | PF07521 | 1.3E-6 | 449 | 478 | IPR011108 | Zn-dependent metallo-hydrolase, RNA specificity domain |
PROSITE profile | PS50090 | 7.863 | 783 | 847 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-5 | 786 | 849 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0039 | 787 | 849 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 4.16E-22 | 789 | 854 | No hit | No description |
Pfam | PF13837 | 3.1E-17 | 789 | 871 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0060918 | Biological Process | auxin transport | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 882 aa Download sequence Send to blast |
MVALASLSSL SPCGLARRRS SSSAASISCC AAPPPPSAKG SQESRTPRRR VRKTEGATKS 60 LEDSVKRKME QFYEGLDGPP LRVLPIGGLG EIGMNCMLVG NYDRYILIDA GVMFPDFDEF 120 GVQKIIPDTT FIKKWSHKIE AVIITHGHED HIGALPWVIP ALDSSTPIFA SSFTMELIKR 180 RLKEFGIFLS SRLKVFRVRK RFQAGPFEVE PLRVTHSIPD CCGLVLRCAD GIIFHTGDWK 240 IDESPVDGKI FDRQALEELS KEGVTLMMSD STNVLSPGRS ISESVVAGSL LRHISEAKGR 300 VITTQFASNI HRIGSIKAAA DLTGRKLVFV GMSLRTYLDA AFRDGKSPID PSTLVHLIES 360 RFLLKVKVED MDAYAPNDLL VVTTGSQAEP RAALNLASFG GSHALKLSKE DVLLYSAKVI 420 PGNESRVMKM LNRLTELGPK IVMGKDAGLH TSGHAYHDEL EEVLQIVKPQ HFLPVHGELL 480 FLKEHELLGR STGIRHTTVI KNGEMLGVSH LRNRRVLSNG FVALGKEDLR LMYSDGDKAF 540 GTATDLCIDE RLRIASDGVI FVSMEIFRPQ KELASSQSGL KGKFKITTRC LWLDNGRLLD 600 ALYKAAYAAL SSCPVNCPLS HMERMVSEIL RKMVRKYSGK RPDVIAVATE NTTVSFVEDS 660 EAKSSGNFGS FSAPRYSSRS SGRSLEESDK SRPENTEGKA KENLPDVLRT TRDDATTSSN 720 GEAFFSSDLH KPKTLEHFWD SFKSPTAVKI ARIVNGSAQG SKSKIGKISI VGKDSSDPSS 780 APVKSSKKNK WKPEEIKSLI QMRGEMNEQF QTVKGRMVLW EEISSSMLSQ GISRTPAQCK 840 SLWTSLVQKY EESKKDEESV KTWPYFLDMD RVLSSQGEMA TQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5a0t_A | 6e-82 | 81 | 650 | 19 | 560 | RIBONUCLEASE J |
5a0t_B | 6e-82 | 81 | 650 | 19 | 560 | RIBONUCLEASE J |
5a0v_A | 6e-82 | 81 | 650 | 19 | 560 | RIBONUCLEASE J |
5a0v_B | 6e-82 | 81 | 650 | 19 | 560 | RIBONUCLEASE J |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:25871650}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK059666 | 0.0 | AK059666.1 Oryza sativa Japonica Group cDNA clone:001-031-F01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627210.1 | 0.0 | ribonuclease J isoform X1 | ||||
Swissprot | Q84W56 | 0.0 | RNJ_ARATH; Ribonuclease J | ||||
TrEMBL | A0A0E0CLN3 | 0.0 | A0A0E0CLN3_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM02G19870.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | ORUFI02G20630.2 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA03G19920.2 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4996 | 35 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63420.1 | 0.0 | Trihelix family protein |
Publications ? help Back to Top | |||
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