PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G18510.4
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 452aa    MW: 50127.2 Da    PI: 7.4376
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G18510.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-052648123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y C+ C+k F r  nL+ H r H
  OMERI02G18510.4 26 YICEVCHKGFQRDQNLQLHRRGH 48
                     89*******************88 PP
2zf-C2H2110.0013102124123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC  C+k +  +s+ k H + +
  OMERI02G18510.4 102 WKCDRCSKKYAVQSDWKAHTKIC 124
                      58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.06E-62548No hitNo description
Gene3DG3DSA:3.30.160.602.2E-52548IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.7412648IPR007087Zinc finger, C2H2
SMARTSM003550.0382648IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
SMARTSM00355526797IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-490123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.06E-697122No hitNo description
SMARTSM00355230102122IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0071805Biological Processpotassium ion transmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0015079Molecular Functionpotassium ion transmembrane transporter activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MVAVLDDPDV EVVALSPKTL LATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKQRSST  60
EAKKKVYVCP EITCPHHDAT RALGDLTGIK KHYSRKHGEK KWKCDRCSKK YAVQSDWKAH  120
TKICGTKEYR CDCGTIFSRK DSFITHRAFC DALAEDTSRV NHSLATMVGS LHGQQQDMFS  180
RGVPSFSSSP TDMIANLASN DHNSDSHLRS LSPYALVTRN TALFSNQISP KESGFPLDGS  240
LTSYPYMSMN SPYMSATALL QKAAEMGAKT SQDPISPLLL KSFPNNLTSP RDHMNISSRS  300
QGDSLGNSTV NSACMKTTED ENSYMIGRGN ILINAPWSSG IMRPGTVPLI GLMNHPFSMR  360
AEKDNPSIFP ENQTQHHRQD NISGVVDADA GLTQDFLGLG GSGTLDMSSE TYNADVTALS  420
YSDEQEKPQE HIYSYHQSSL DPTALEKPIW DS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-3398161366Zinc finger protein JACKDAW
5b3h_F5e-3398161366Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879352.10.0protein indeterminate-domain 2-like
TrEMBLA0A0E0CL920.0A0A0E0CL92_9ORYZ; Uncharacterized protein
STRINGOMERI02G17750.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-101indeterminate(ID)-domain 2