PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G18080.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 912aa    MW: 102069 Da    PI: 5.0914
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G18080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.11.4e-18701991128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                      lp+G++F+Ptd +l+  +L+++v + +      +  +e+ik+vd      +++P+d+p  ++++    yfF+k+ k+ ++  ++++ ++   W+
  OMERI02G18080.1  70 LPRGVEFNPTDGDLL-WHLAAEVGNGQarrhpfI--NEFIKSVDetigFGYTHPQDIP-GIRQDGCASYFFHKNFKECTN--ENSKCIR---WQ 154
                      699************.789999988886776442..233554443333899*******.666777789******999876..3444445...** PP

              NAM  85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      ++g+  +++  +g+l g+k+++v+y  + +  +++ tdW +h+y++
  OMERI02G18080.1 155 KSGNPISITL-DGNLQGCKEVFVLYayETDGDNPRITDWRLHQYHI 199
                      **********.999***********77567777789********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-2562217IPR003441NAC domain
PROSITE profilePS5100521.48770217IPR003441NAC domain
PfamPF023656.8E-871199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    Send to blast
MAKDKEVGPP PPPCVDSDHE DLPLAERRRR LLRPPAESKP PAPERREASA AAAAAAEDSG  60
GAAQQGWPGL PRGVEFNPTD GDLLWHLAAE VGNGQARRHP FINEFIKSVD ETIGFGYTHP  120
QDIPGIRQDG CASYFFHKNF KECTNENSKC IRWQKSGNPI SITLDGNLQG CKEVFVLYAY  180
ETDGDNPRIT DWRLHQYHIE STEKDEGELV VSKIFYELEK NQFKWAEKSH AQSAQGASAI  240
DDDSKEELQL DNHSFNMITE YSSVQGSVSS FPSIYFKCIF CNIDHDSEFS SGNENKQKQM  300
QTGTCPNLDK LSYFNVVSNM HIGNQINDRD EIEELDHMSL QERYRILMAE KHSSSAVVSS  360
EQCAIDGLEN SCKPGTNGMI PKRIHEGTAF RDGMYSMLQE ISSAPAIIGS IDNDNNRRLL  420
TEGLSNNQQS HEAGCESGFL STSSSAAPPK CQVVCSHDLL VNGKTLIYSR DPSSSSTPTF  480
GDENIQLEGT DDRTLLVDVK LEPALEGDFT EKITSSVQRT DPNHGTEGSN LVGSINSVSS  540
AISKRISEAA RSNPENSHVE GLLPSSRIKS EVTGSELPLV VCGLTSISIA GLTAKKTNTL  600
NHDGVLAYCS RKRKRRKTLR DPSEKTLEED SLRNDEGTAY FSRQRRRRKT ATDSIETALE  660
EDAPGLLQIL LDKGILVKEI KLYGVEEDDD MVPDCTESDF QDLENVITKL FPQRTSLLKS  720
ALRHEKGEKA IYCLTCLISL IEQSRYLQFR DCPVEWGWCR DLQSFIFIFK SHNRIVLERP  780
EYGYATYFFE IVKSLPIQWQ IQRMVTAMKL SGCGRTALIE NRPLLIGEDL TEGEARVLEE  840
YGWVPNSGLG TMLNYRDRVV HDRWNERSGI DWKTKIGKLL MNGYSEGHLV LSHFPTKVGK  900
IDDTEIKQED PL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1610615RKRKRR
2610616RKRKRRK
3611616KRKRRK
4632645RNDEGTAYFSRQRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1052830.0AK105283.1 Oryza sativa Japonica Group cDNA clone:001-116-E01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632079.10.0uncharacterized protein LOC4332096
TrEMBLA0A0E0CL340.0A0A0E0CL34_9ORYZ; Uncharacterized protein
STRINGOMERI02G17350.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74793239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.13e-39NAC family protein