PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI02G14870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 414aa MW: 44909.6 Da PI: 6.5798 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.1 | 3.6e-32 | 237 | 292 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 kpr++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ OMERI02G14870.1 237 KPRRCWAPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 292 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.508 | 234 | 294 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.54E-17 | 235 | 295 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-28 | 235 | 295 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-27 | 237 | 292 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.8E-6 | 239 | 290 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0055062 | Biological Process | phosphate ion homeostasis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MEVDHADRDG ARRRCREYLL ALEEERRKIQ VFQRELPLCF DLVTQTIEGM RSQMDGAGSE 60 ETVSDQGPPP VLEEFIPLKP SLSLSSSEEE STHADATKSG KKEEAETSDR HSSPPPPPPP 120 VEAKKVTPDW LQSVQLWSQE EPQQPSSPSP TPTKDLPCKP VALNARKAGG AFQPFEKEKR 180 TELPASSTTA AASSTVVGDS GDKPTDDDTE KHMETDKDND KDAKDKDKEG QSQPHRKPRR 240 CWAPELHRRF LQALQQLGGS HVATPKQIRE LMKVDGLTND EVKSHLQKYR LHTRRPSSTR 300 QSSAAAGVPA PPAPQFVVVG SIWVPPPEYA AAAAAQQHVQ LAAAGNNASG SANPVYAPVA 360 MLPAGLQPHS HRNQQQQQQQ GQRHSGLEGR RSGDAGDGSS SSPAVSSSSQ TTSA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-13 | 237 | 290 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-13 | 237 | 290 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 7e-13 | 237 | 290 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-13 | 237 | 290 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-13 | 237 | 290 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-13 | 237 | 290 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-13 | 237 | 290 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-13 | 237 | 290 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-13 | 237 | 290 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-13 | 237 | 290 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-13 | 237 | 290 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-13 | 237 | 290 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00218 | DAP | Transfer from AT1G68670 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by nitrate. {ECO:0000269|PubMed:23324170}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT831013 | 0.0 | CT831013.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128H23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623779.1 | 0.0 | transcription factor NIGT1 | ||||
Swissprot | Q6Z869 | 0.0 | NIGT1_ORYSJ; Transcription factor NIGT1 | ||||
TrEMBL | A0A0E0CJV1 | 0.0 | A0A0E0CJV1_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI02G14410.2 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6470 | 37 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25550.1 | 2e-56 | G2-like family protein |
Publications ? help Back to Top | |||
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