PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G13470.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 428aa    MW: 45576.8 Da    PI: 5.5445
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G13470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.53.4e-16101491128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknra....tksgyWkatgkd 89 
                      l pGf+F+P+ e+l++++L + +++++l ++ v+   d  ++ Pw L  ++ +++e+e yf  +      +g r++++    t+ g W ++ ++
  OMERI02G13470.1  10 LSPGFKFNPSVEQLLCFFLLPYLRHQRLLVDGVVFLDDPASAPPWALLhRHGRGGEDEAYFIGPVPAGDGHGGRRQQQvsrgTDGGKWIKQRTE 103
                      579************************9998888888**********834555577799***99988888655444322333889***988776 PP

              NAM  90 kevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++  ++       +++  +   +L f+  ++ ++ +t Wvmhe+++
  OMERI02G13470.1 104 RRRGEEkpvvvfgGETFRWEEFSLNFHADERCRSGSTGWVMHEFAV 149
                      65555434444444444788889****99999999*********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-294169IPR003441NAC domain
PROSITE profilePS5100524.38610169IPR003441NAC domain
PfamPF023651.1E-1012148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MANSAESQGL SPGFKFNPSV EQLLCFFLLP YLRHQRLLVD GVVFLDDPAS APPWALLHRH  60
GRGGEDEAYF IGPVPAGDGH GGRRQQQVSR GTDGGKWIKQ RTERRRGEEK PVVVFGGETF  120
RWEEFSLNFH ADERCRSGST GWVMHEFAVV PPAGSRVAAT HTACRIAFTS HGQKRKRVPD  180
GYVFVDVQQF LGQYHEVMFT GLGGGLVVSD NGERASAAAP ATEPPVHDVF LEPPENEYVD  240
GAGESAMASP GSAGGAPLLK QPFATPQQFL DQEQAQAPAP APAGLNDGGA VISNNNNGDG  300
EHDAAPAAQP PTRYYNGPVP AVNSVFLDKM RKYLMADAKG LCRIDAHTNG EHAAAPAPAA  360
DDPLAAQHGS APPPPPVPPD TAELERVVGQ LLREAEDIIK VAAAGGYGGS SDKPLSEFDK  420
AQNHILPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040010.0AP004001.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1115_D03.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0CJB10.0A0A0E0CJB1_9ORYZ; Uncharacterized protein
STRINGOMERI02G13210.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143261123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.13e-09NAC domain containing protein 52