PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G13440.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 491aa    MW: 55830.4 Da    PI: 3.9411
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G13440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.82.3e-15101431127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevd..iykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk 88 
                      l pGf+F+P+d+ lv  +L + + + +l++     +++ +   + + Pw L  ++ +++e+e yf ++       g r+ r ++  + W ++ +
  OMERI02G13440.1  10 LSPGFKFNPSDQMLVELFLLPYLIDGELPVRGLvfVEDDHlgGLPLPPWILLdRHGRGHEDEAYFVAPMGA--GDGARQVRsVAGGSKWVKQRS 101
                      579**********************9988866432444331146679****73444556668888888766..568999995566677*97765 PP

              NAM  89 ..dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                        + ev+++  ++e  + k +L f++ ++++g +t Wvmhey 
  OMERI02G13440.1 102 egKGEVVVApgGEEFRWEKFSLNFHRDDRRSG-STGWVMHEYI 143
                      223344444566666999*******8777776.9********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-253150IPR003441NAC domain
PROSITE profilePS5100521.00110164IPR003441NAC domain
PfamPF023658.1E-1112143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MAAAARSQGL SPGFKFNPSD QMLVELFLLP YLIDGELPVR GLVFVEDDHL GGLPLPPWIL  60
LDRHGRGHED EAYFVAPMGA GDGARQVRSV AGGSKWVKQR SEGKGEVVVA PGGEEFRWEK  120
FSLNFHRDDR RSGSTGWVMH EYIVSPPAGS AVAASHRATH IAFTGHGQNR KRVPDGYVLV  180
LDAAAAVAAP PPPPESEQSN QEEQEYAVYT DQIQQQCFVS EQQMSNQDYF PETAAEQSSQ  240
QFFVPAEEQS SHQLLPAEDQ SSHQFFLPAE EQMTQSNQEY AYDEQSQCYI LPEQQQLSNQ  300
EYAYSEETQC YIMPEQQQQS NQEAEYAFAC YDEQQQQQQQ SNQEAEYAFA CYDEQQQQEQ  360
QSNQDAEYAF ACYDEQQQQQ QQYFHGDLTS WQEPLVTSSS STSQQFLGQE KLMPDGLLLD  420
GGFGEISQQQ GNQEYAYCEE SQCYIMPEQQ QQSNQEAEFA FACYDEQQQQ QHYFHEDLTS  480
WQEPLETTTS Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0CJA80.0A0A0E0CJA8_9ORYZ; Uncharacterized protein
STRINGOMERI02G13190.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143261123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-08NAC domain containing protein 47