PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G11060.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family BES1
Protein Properties Length: 350aa    MW: 35888.8 Da    PI: 9.3241
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G11060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822187.45.8e-5851181111
           DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspes 92 
                      gg+gr ptw+ErEnn+rRERrRRaiaakiyaGLRa+Gny lpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+  e a++ g+s sasp+s
  OMERI02G11060.1   5 GGGGRVPTWRERENNRRRERRRRAIAAKIYAGLRAYGNYTLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPPasELADQLGRSPSASPCS 98 
                      689*************************************************************************988999************ PP

           DUF822  93 slqsslk.ssalaspvesys 111
                      s+q s++ +s+++s  +s++
  OMERI02G11060.1  99 SYQPSPRgTSSFPSSGSSSQ 118
                      ***55441556666655554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.3E-636142IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MMNGGGGGRV PTWRERENNR RRERRRRAIA AKIYAGLRAY GNYTLPKHCD NNEVLKALCN  60
EAGWTVEPDG TTYRKGCKPP ASELADQLGR SPSASPCSSY QPSPRGTSSF PSSGSSSQIT  120
LGGGGGGGGE GSSLIPWLKT LSSAGVGIGG GSSSKFPAHY SYFGGGSISA PVTPPSGSPP  180
RTPRLKTAAW EEYHHHAGSV LPPWATVDAS YAYAASSLPN STPPSPRRKV AAAAAAAAGG  240
NDAAAWLAGF QISSAGPSSP TYSLVAPPPN PFGAAAAAAG SSSRVMSGAC SPVAGGDVQM  300
ADVARREFAF GGEGKMTGLV KAWEGERIHE ECGSDDLELT LGSSMTRGDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A2e-24985372448Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B2e-24985372448Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C2e-24985372448Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D2e-24985372448Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040700.0AP004070.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1705_E12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624154.11e-175protein BZR1 homolog 4
SwissprotQ6EUF11e-176BZR4_ORYSJ; Protein BZR1 homolog 4
TrEMBLA0A0E0CIE20.0A0A0E0CIE2_9ORYZ; Uncharacterized protein
STRINGOMERI02G10970.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136638112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.12e-51BES1/BZR1 homolog 4