PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G10650.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 579aa    MW: 60260.9 Da    PI: 6.5508
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G10650.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.89.1e-095045411954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe+   +yp+ +e+e LA++ gL+ +qV++WF N R +
  OMERI02G10650.2 504 FENflRPYPKDSEKEMLAARSGLSRNQVSNWFINARVR 541
                      7766689*****************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075261.5E-18241432IPR006563POX domain
PROSITE profilePS5007111.58482545IPR001356Homeobox domain
CDDcd000868.50E-12485546No hitNo description
SMARTSM003891.9E-7485549IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.4E-25485556IPR009057Homeodomain-like
SuperFamilySSF466891.71E-15486554IPR009057Homeodomain-like
PfamPF059201.3E-15502541IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MSGNPSFSQL GAVDATMNGG YFMAASGNGA DVPLFHPSMA PPHDHGGSFG YGDAAAMDVG  60
AHFAAANNLV LASLATQLFG AAPAAAAHGH GDYLGATTTT PEEEMGGGYD VAVGDSSGGA  120
VSLACLGHGQ PGDMAAGWCS TSSRKPSCNW SSSNAGVHGG SYYLAGVPEA AGFVSAAAAA  180
ASELSLSLCS KSSSDSMLNA SGDQCSSAAS RSGLTQMSRV VVEPELPLVP YYPAANFAVV  240
VALSRYAAVA QQVLNDAVGC VLGGVADAAA ADSASGVDSG GSRPSSCSVA GGAPSSAVSS  300
NNQLIASSSE HTHVGGDASA QRLRSELLTM LQLVSSPFST RLPRHQFKQI SYHFEANLKP  360
FSDDDTNSNA QMDQKYNQCL DEIQSTTARF NTLTHATARA AGMSSSSSSS ICAPFAHRTV  420
SAMYHGLRRR IAGEIMSAAA AGGRPCRGES SSAVTGGERE RSWESAFIQK HWAVQQLRRG  480
EQQCWRPQRG LPEKSVAVLK AWMFENFLRP YPKDSEKEML AARSGLSRNQ VSNWFINARV  540
RLWKPMIEEM CEELKRSSGG GAGNQALAME HMNSQDVVS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0050030.0AP005003.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0495C02.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624855.10.0homeobox protein ATH1 isoform X2
RefseqXP_025878539.10.0homeobox protein ATH1 isoform X2
TrEMBLA0A0E0CI880.0A0A0E0CI88_9ORYZ; Uncharacterized protein
STRINGOMERI02G10560.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-50homeobox gene 1