PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G10300.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 663aa    MW: 69462.6 Da    PI: 9.0837
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G10300.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11445488553
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                      h + ErrRR+r+N++fe Lr llP+       K +Ka++L k+ eY++ 
  OMERI02G10300.2 445 HMISERRRRERLNESFEHLRGLLPPG-----SKKDKATVLAKTLEYMNL 488
                      8899********************95.....599************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-16439510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.212440489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-15444509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9445488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-11446495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.93E-5455489No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MDTIFVLGQE SRQRILHRAA ARLPGCAYVC AWAPLPLPAA GLHHHQPPPP PPSSGGAAAR  60
LLYCVDGWLS GGEDGGGVRA LFDAYRGSVC GAVTGCVPGW AYVGGGGAFM ELSELELVAS  120
ASLPVQQSFY QEAGIKVRNL FHNICFVRVV LAEKSRRMKL TWAILGGVQM AAFMGCESGE  180
IEVGFSTAPA ENYGGGAGGS LQASVEQVFS EDFFQQSLLE ELLQLPPTRP SSSSSSLVGS  240
PADGAASTSL LRTMTPMMAS SSATPSPREL AAQVATTPSS SRLHPRPPAP HHVHVSPFSR  300
HGGGVLHFPS AEADDAAMAQ AMLDVISSPS TSSSAAALHA PWSSVKRRAQ IIRSPPRGTP  360
ATTTAFRAYN AALAPRAAAS RRPPGAPGQR MIKMGFSILR RMHMVRCSQE RAAAASAAAA  420
QRSGGDDDED ATAAPPPPTS SQLHHMISER RRRERLNESF EHLRGLLPPG SKKDKATVLA  480
KTLEYMNLLI AQISELEAKN RALQTQIHQR ANGSSSSRSS MIRTVNEVHH HHHHQWLAVA  540
GAAGSPERVQ VHVIGGGDHD GGTSTSSSSA PEVTVRVAVR ARERGGADVS ELVLRVLALL  600
KAMGGFTVVA VDARQPGGGG NGGAAQASLT LRATAGEFDE ASLKEAVAKA VESLVAPPPP  660
PPP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1448453ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623939.10.0putative transcription factor bHLH041
TrEMBLA0A0E0CI270.0A0A0E0CI27_9ORYZ; Uncharacterized protein
STRINGOMERI02G10210.10.0(Oryza meridionalis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-12bHLH family protein