PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI02G09800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 252aa MW: 27959.3 Da PI: 5.0835 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 116.4 | 2.8e-36 | 12 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +ppGfrF+Ptde+lvv+yL+++++++++ + i+++d+y+v+Pw+Lp +++++++++ yfF+++++++ +++r+t sg+Wk t ++k+++ OMERI02G09800.1 12 MPPGFRFQPTDEQLVVDYLQRRTAAQPCVT-PDITDIDVYNVDPWQLPaMAMYGSDHDRYFFTTAAREE----QARRTTPSGFWKPTSTKKTIF 100 79*************************988.55***************778888999*******99875....7899****************9 PP NAM 94 sk...kgelvglkktLvfy......kgrapkgektdWvmheyrl 128 + ++ + +k+ +vfy +g++ + +kt+W+mheyrl OMERI02G09800.1 101 VVaggHEVSTAVKRRFVFYlghhqpSGSN-NNNKTSWIMHEYRL 143 99766666799********6554433333.346*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.11E-40 | 4 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.41 | 12 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-22 | 13 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MAMTPQLAFS RMPPGFRFQP TDEQLVVDYL QRRTAAQPCV TPDITDIDVY NVDPWQLPAM 60 AMYGSDHDRY FFTTAAREEQ ARRTTPSGFW KPTSTKKTIF VVAGGHEVST AVKRRFVFYL 120 GHHQPSGSNN NNKTSWIMHE YRLMNPPIGA AAAPPASSSS VDLREETMVL CRISNKDLPK 180 PPFIHNGLLQ FSSVGLNGDG YNYLILDHLE PPAMEYPNVD IGNAAADAAA GTDDPGDLDE 240 EIDDNMQRNH GG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-28 | 12 | 176 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-28 | 12 | 176 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-28 | 12 | 176 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-28 | 12 | 176 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-28 | 12 | 176 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-28 | 12 | 176 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-28 | 12 | 176 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-28 | 12 | 176 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-28 | 12 | 176 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-28 | 12 | 176 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-28 | 12 | 176 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-28 | 12 | 176 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-28 | 12 | 176 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-28 | 12 | 176 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107283 | 0.0 | AK107283.1 Oryza sativa Japonica Group cDNA clone:002-126-B03, full insert sequence. | |||
GenBank | EF122479 | 0.0 | EF122479.1 Oryza sativa (japonica cultivar-group) clone KCS348H05 NAC6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625739.1 | 1e-165 | NAC domain-containing protein 48-like | ||||
TrEMBL | A0A0E0CHV1 | 0.0 | A0A0E0CHV1_9ORYZ; Uncharacterized protein | ||||
STRING | ORUFI02G08550.1 | 1e-165 | (Oryza rufipogon) | ||||
STRING | OS02T0214500-01 | 1e-165 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16540 | 12 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 2e-33 | NAC family protein |