PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G08460.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 420aa    MW: 43498 Da    PI: 5.9298
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G08460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS236.21.4e-72454173374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                       l+l+cA+ ++ gdl  a+++   +   a p+g++  Rla++f++AL a   + +++              ++ + aa+ ++ ++ P+l+f+hl
  OMERI02G08460.1  45 GLVLACADLFHRGDLDGARRVADAVLAAADPRGEAGDRLAHHFARALLALRGG-GKGGHGGGGGGGG---GVVPSSAAYLAYIKIAPFLRFAHL 134
                      5789******************************************9886666.3333322222222...38888899999************* PP

             GRAS  97 taNqaIleavege.........ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                      taNqaIlea++ +         + +Hi+D+d+ +G+QWp+Llqa+a+R+    ++pp++R+Tg g     +++ l +tg+rL+ f ++l++pf+
  OMERI02G08460.1 135 TANQAILEAAAAAatdaggahrRVLHIVDLDAAHGVQWPPLLQAIADRAdpaaGPPPEVRLTGAGT----DRDVLLRTGDRLRAFSSSLNLPFR 224
                      ********99887777888884455***********************988877899*********....************************ PP

             GRAS 178 fnvl...vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse........sFlerflea 260
                      f++l    + +l++  + +L+++p+E+laVn+vl lh+l   +++l+     +L+ vks++P vv+++e+e  +++         ++ +r++ a
  OMERI02G08460.1 225 FHPLilpCTAELAADPTAALELHPDETLAVNCVLFLHKLG-GDGELAA----FLRWVKSMNPAVVTIAEREGVLGGDvdddnvpdELPRRVAAA 313
                      ****554445666668899********************8.5666666....*******************888655577788999******** PP

             GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve 352
                      ++yys++fd+lea++p++s +r  vE+e+l+rei  +v + g   +  r + +  W                +aa+qa+lllr ++ s+gy+ +
  OMERI02G08460.1 314 MDYYSSVFDALEATVPPASADRLAVEQEILSREIDAAVVAPGGGgSGGRARGFDAWA--------------AFAASQARLLLRLHYpSEGYKAD 393
                      **********************************98766665552667777666664..............689******************** PP

             GRAS 353 ee..sgslvlgWkdrpLvsvSaWr 374
                      ++  +g+ +l W++rpL+svS+W+
  OMERI02G08460.1 394 DDggRGACFLRWQQRPLMSVSSWQ 417
                      996667788**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.69917420IPR005202Transcription factor GRAS
PfamPF035144.8E-7045417IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MLGSSPARDR GGGGDDAAAA SASASEQPRP QPPLLPRAGG GEARGLVLAC ADLFHRGDLD  60
GARRVADAVL AAADPRGEAG DRLAHHFARA LLALRGGGKG GHGGGGGGGG GVVPSSAAYL  120
AYIKIAPFLR FAHLTANQAI LEAAAAAATD AGGAHRRVLH IVDLDAAHGV QWPPLLQAIA  180
DRADPAAGPP PEVRLTGAGT DRDVLLRTGD RLRAFSSSLN LPFRFHPLIL PCTAELAADP  240
TAALELHPDE TLAVNCVLFL HKLGGDGELA AFLRWVKSMN PAVVTIAERE GVLGGDVDDD  300
NVPDELPRRV AAAMDYYSSV FDALEATVPP ASADRLAVEQ EILSREIDAA VVAPGGGGSG  360
GRARGFDAWA AFAASQARLL LRLHYPSEGY KADDDGGRGA CFLRWQQRPL MSVSSWQPQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-395041926381Protein SCARECROW
5b3h_A1e-395041925380Protein SCARECROW
5b3h_D1e-395041925380Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196104GGKGGHGGG
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624347.20.0protein MONOCULM 1-like
RefseqXP_025879052.10.0protein MONOCULM 1-like
SwissprotQ84MM91e-128MOC_ORYSJ; Protein MONOCULM 1
TrEMBLA0A0E0CHA90.0A0A0E0CHA9_9ORYZ; Uncharacterized protein
STRINGOMERI02G08380.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.12e-42GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]