PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI02G08400.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 306aa MW: 33423.4 Da PI: 8.9193

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI02G08400.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.8	1e-06	152	171	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r nL+ H+ OMERI02G08400.1 152 FSCPVCRKTFNRYNNLQMHM 171 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.1E-5	146	174	No hit	No description
SMART	SM00355	0.055	152	174	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.492	152	179	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	7.9E-6	152	171	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	154	174	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.2E-4	223	257	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	160	237	257	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MEDYAQTNLI SRGHGHHQPE LMTKEFPFLG LISSTSSCIS SSGHQQQQQD DDGHGGHDRH 60 QLLRYGCCSG KQQEEEEEEV TVALRIGLPA VSSASPAMAN HGASASSTGV AGDDGGAMAG 120 VGVEVESVRR SGGGGQYWIP TAAQILAGAT QFSCPVCRKT FNRYNNLQMH MWGHGSQYRR 180 GGTAALRGAQ PTAMLRLPCY CCCAGCRNHI DHPRARPLKD FRTLQTHYRR RHGARDFACR 240 RCAKRFAVRG DWRTHEKNCG RLWRCACGAH FRHKRSLNDH ARAFGAAHTA AEDDGRATAA 300 AAGVLR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108729	0.0	AK108729.1 Oryza sativa Japonica Group cDNA clone:002-150-D01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624987.2	1e-137	zinc finger protein WIP5
Swissprot	Q8W031	6e-93	ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBL	A0A0E0CH99	0.0	A0A0E0CH99_9ORYZ; Uncharacterized protein
STRING	OMERI02G08320.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-86	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]