PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G05750.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 282aa    MW: 30438.4 Da    PI: 7.3626
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G05750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.62.8e-222670145
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     k ienk  rqv fskRr+g++KKA+ELSvLC+a+vav+ fs+ g+
  OMERI02G05750.1 26 KLIENKDARQVCFSKRREGVFKKASELSVLCGARVAVVFFSPAGR 70
                     569***************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.7E-281877IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.7961878IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.26E-251987IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-172040IPR002100Transcription factor, MADS-box
PfamPF003192.6E-242874IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-174055IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-175576IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MEDVGGVGGE GRRRKRTRGR QRIEMKLIEN KDARQVCFSK RREGVFKKAS ELSVLCGARV  60
AVVFFSPAGR PHCFGHPSVP AVADRFLLGR SPAVAAAAAD EEAVVREFNR VEKRLRDALG  120
AAARRRDALD EAARAAGVWD DADVRRAGLA DLMSMLAALQ RVQAEASERV HDIIVEEAMT  180
HYTATAAANL IDYLDAGPFV SHSPGSHDTT TKLIGGNVVH APPPSFPPMI MPPPLPPQFT  240
HGFGYTDLAA GYGYNLDHGH GLGHGAAYGT DEFYNATACD FF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11121RRRKRTRGRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878655.11e-158agamous-like MADS-box protein AGL28
TrEMBLA0A0E0CG300.0A0A0E0CG30_9ORYZ; Uncharacterized protein
STRINGOMERI02G05720.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133092432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.17e-21AGAMOUS-like 29