PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI02G05490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 427aa MW: 49136.5 Da PI: 9.6699 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.5 | 2e-07 | 11 | 34 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC ++r G C++ d+C+FaHg OMERI02G05490.1 11 YKTKLCALWQR-GNCNR-DTCSFAHG 34 9**********.*****.*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-11 | 5 | 42 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.83E-5 | 9 | 39 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0016 | 10 | 35 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.136 | 10 | 36 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-5 | 11 | 34 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:1902185 | Biological Process | positive regulation of shoot apical meristem development | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MLGPPRRGPA YKTKLCALWQ RGNCNRDTCS FAHGHGDIRR PPSSRGGAFP HHPGRRDYRG 60 GDFRGRIDRR FSPRRRHSPG RESRGHRPLY DRRPSSRERD SSYSRSPSRK SERRHEKKTD 120 DGETNSSRSL SLFDNNDEKK KDKFSSGDEK EDHEKQLKQI RLDMEALRDD KTQMEVILDE 180 KIDEVRKISS KVNDLEVQLR REKDECHRMT SKMKKFIKAH ARFLKAQEEV KRSQARFERL 240 GDLLASDILK RGANEEGSSV NEDLNERSPN TAATKKRSIP YSTSEEAKAV KKRRERDSDT 300 MTRSDKYRSD GTDFDKTSKG TEATKSLYLK KKLWEDEKSK LGANIFTEKV KGSPVRHVLP 360 STGMAAHAID DLNEAIELED RHESIDALLE NDADDKTRSP TIPLQPPPAV QNAYEQYEGD 420 DEEVDVE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 274 | 293 | KKRSIPYSTSEEAKAVKKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK065198 | 0.0 | AK065198.1 Oryza sativa Japonica Group cDNA clone:J013002E19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624712.1 | 0.0 | zinc finger CCCH domain-containing protein 13 isoform X3 | ||||
Swissprot | Q6H7U2 | 0.0 | C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13 | ||||
TrEMBL | A0A0E0CFZ8 | 0.0 | A0A0E0CFZ8_9ORYZ; Uncharacterized protein | ||||
STRING | ORGLA02G0043200.1 | 0.0 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21810.1 | 2e-22 | C3H family protein |
Publications ? help Back to Top | |||
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