PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI02G04720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 255aa MW: 27266.4 Da PI: 9.167 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.9 | 1.9e-19 | 124 | 178 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t eq + Le+ F+ ++ +s++e++eLA klgL+ rqV vWFqNrRa+ k OMERI02G04720.1 124 RKKLRLTGEQATLLEDSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRARTK 178 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 114.2 | 8e-37 | 124 | 211 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+ eq++lLE+sF++++ L++ +K+ela +Lgl++rqv+vWFqnrRARtk+kq+E d++ L+r++d+l+++n+rL+++ +eL+ OMERI02G04720.1 124 RKKLRLTGEQATLLEDSFRAHNILSHAEKQELAGKLGLSARQVEVWFQNRRARTKLKQTEADCDLLRRWCDHLAADNARLRRDLAELH 211 69***********************************************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-19 | 101 | 181 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.378 | 120 | 180 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-16 | 122 | 184 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.88E-18 | 123 | 189 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.42E-14 | 124 | 181 | No hit | No description |
Pfam | PF00046 | 7.2E-17 | 124 | 178 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 9.6E-7 | 151 | 160 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 155 | 178 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.6E-7 | 160 | 176 | IPR000047 | Helix-turn-helix motif |
SMART | SM00340 | 8.2E-8 | 180 | 221 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 4.7E-7 | 180 | 210 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MSSSSLTTTT TSSMDSVVDG GLDTRLSLAV GRCCPPPPPR RPVLLFGEVL PSPEKKVAAA 60 VVATGKRGRE QRGEAEAEAT TTRQRRSSKK GRRGRGDDDD DDGDRRSPSG GGGGGGGDEE 120 GASRKKLRLT GEQATLLEDS FRAHNILSHA EKQELAGKLG LSARQVEVWF QNRRARTKLK 180 QTEADCDLLR RWCDHLAADN ARLRRDLAEL HRSSSPPVSG LAVATPVVCP SCAHDDKRRL 240 AFATADAAAG DMASN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 128 | SRKKLRL |
2 | 172 | 180 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005412 | 1e-167 | AP005412.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0050G13. | |||
GenBank | AP014958 | 1e-167 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 1e-167 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624893.1 | 1e-115 | putative homeobox-leucine zipper protein HOX26 | ||||
Swissprot | Q67UX6 | 1e-116 | HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26 | ||||
TrEMBL | A0A0E0CFN3 | 0.0 | A0A0E0CFN3_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI02G04690.1 | 1e-173 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8315 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 4e-28 | homeobox protein 2 |