PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G04610.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 359aa    MW: 38297.6 Da    PI: 5.0039
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G04610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.91e-16267304136
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                      C++Cg +   Tp++Rrgpdg++tLCnaCGl+++ kg++
  OMERI02G04610.1 267 CHHCGISAasTPMMRRGPDGPRTLCNACGLMWANKGTM 304
                      *****88888*************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.794100135IPR010399Tify domain
SMARTSM009792.2E-7100135IPR010399Tify domain
PfamPF062004.1E-10103134IPR010399Tify domain
PROSITE profilePS5101713.384161203IPR010402CCT domain
PfamPF062036.2E-16161203IPR010402CCT domain
SMARTSM004014.1E-13261314IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.183261309IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-12264317No hitNo description
Gene3DG3DSA:3.30.50.103.6E-15265307IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.94E-14266310No hitNo description
PfamPF003201.4E-14267304IPR000679Zinc finger, GATA-type
PROSITE patternPS003440267294IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSGHHEAKPY QPRRGPAPAD EEAAPAAAAD EAEAEAEVEA MERYEQEQEY EEGEEGEEEE  60
YEGGEGVPMD ADASAAAVAG MDPHGEMVPV AGGEAGGGYP HVASNTLTLS FQGEVYVFES  120
VSAERVQAVL LLLGGRELAP GSGSVPSSSA AYSKKMNFPH RMASLMRFRE KRKERNFDKK  180
IRYTVRKEVA LRMQRNRGQF TSSKSKAEEA TSAITSSEGS PNWGAVEGRP PSAAEISFSL  240
LTGWLPVVGT LSLFAPSPSW VSRRRRCHHC GISAASTPMM RRGPDGPRTL CNACGLMWAN  300
KGTMREVTKG PPVPLQIVPA ATNDVQNGIV EATGVEQHNS AVEEAVSAAN GHESQSGVA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0689310.0AK068931.1 Oryza sativa Japonica Group cDNA clone:J023003E02, full insert sequence.
GenBankEU8470150.0EU847015.1 Oryza sativa Japonica Group clone KCS277B09 GATA zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622990.11e-175GATA transcription factor 17 isoform X1
SwissprotQ6Z4331e-176GAT17_ORYSJ; GATA transcription factor 17
TrEMBLA0A0E0CFL80.0A0A0E0CFL8_9ORYZ; Uncharacterized protein
STRINGOPUNC02G02970.11e-176(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.27e-61ZIM-LIKE 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]