PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI02G04340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 448aa MW: 49770.9 Da PI: 4.7764 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 60.9 | 4.1e-19 | 9 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdke 91 l+pGf+F+P+de+lv+++L + +++ +++l + + d +v Pw+L ++ +++e++ yf +++d + r+ r+ + +g+W a+ +++ OMERI02G04340.1 9 LTPGFKFEPSDEQLVQFFLLPYLRELPVPLGGLVIRDDPRSVPPWKLFaRNGRGDEEDAYFLAPADGEG----RQARTCDggRGRWIAQRLERT 98 579***************************8888888**********8334445666779988887753....555543323899***999887 PP NAM 92 vlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++++ k+ L ++ g+ + g +t Wvmhey++ OMERI02G04340.1 99 GDLRlaggggGEAVMFEKHRLNYHAGEGRCG-STGWVMHEYAV 140 77767788877777999*******9999987.9********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-27 | 3 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.268 | 9 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-14 | 11 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MAAAKMAGLT PGFKFEPSDE QLVQFFLLPY LRELPVPLGG LVIRDDPRSV PPWKLFARNG 60 RGDEEDAYFL APADGEGRQA RTCDGGRGRW IAQRLERTGD LRLAGGGGGE AVMFEKHRLN 120 YHAGEGRCGS TGWVMHEYAV VKPAALGARH RACHIAFTGH GQKRKRVPDG YVDVEDDGSK 180 ASTSAAAAAA VPPSSTAAMS TSPSNVAYNQ EYHISPEQSI QQHFPAEHNN VQIQQQAYYQ 240 SQYHEQCQYS DEEKYLLQQI KQEQYYYNQQ NCFLPGQGNQ ELYYNNDAQQ QIFSLPEHQC 300 SQEQYCHHDD QQDCVLPEQH GQELHGYNNE EQGYLLPPEP IGKEEQAFFV GGEPQHEKQP 360 LTSTSQQVLL DHDGKLLPPV GVNGAVAIPP QDAAVASNDD DGGQATEAPA VKMTAEEKKW 420 FMEELLTEGC WSGPLLFDQP YYGSALKN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004759 | 0.0 | AP004759.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0670E08. | |||
GenBank | AP005490 | 0.0 | AP005490.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0049I01. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649258.1 | 0.0 | uncharacterized protein LOC107275324 | ||||
TrEMBL | A0A0E0CFH5 | 0.0 | A0A0E0CFH5_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI02G04360.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP802 | 22 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10500.1 | 2e-09 | NAC domain containing protein 53 |