PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G04340.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 448aa    MW: 49770.9 Da    PI: 4.7764
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G04340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.94.1e-1991401128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdke 91 
                      l+pGf+F+P+de+lv+++L + +++ +++l   + + d  +v Pw+L  ++ +++e++ yf +++d +     r+ r+ +  +g+W a+  +++
  OMERI02G04340.1   9 LTPGFKFEPSDEQLVQFFLLPYLRELPVPLGGLVIRDDPRSVPPWKLFaRNGRGDEEDAYFLAPADGEG----RQARTCDggRGRWIAQRLERT 98 
                      579***************************8888888**********8334445666779988887753....555543323899***999887 PP

              NAM  92 vlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +      +++++  k+ L ++ g+ + g +t Wvmhey++
  OMERI02G04340.1  99 GDLRlaggggGEAVMFEKHRLNYHAGEGRCG-STGWVMHEYAV 140
                      77767788877777999*******9999987.9********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-273158IPR003441NAC domain
PROSITE profilePS5100525.2689158IPR003441NAC domain
PfamPF023655.0E-1411139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MAAAKMAGLT PGFKFEPSDE QLVQFFLLPY LRELPVPLGG LVIRDDPRSV PPWKLFARNG  60
RGDEEDAYFL APADGEGRQA RTCDGGRGRW IAQRLERTGD LRLAGGGGGE AVMFEKHRLN  120
YHAGEGRCGS TGWVMHEYAV VKPAALGARH RACHIAFTGH GQKRKRVPDG YVDVEDDGSK  180
ASTSAAAAAA VPPSSTAAMS TSPSNVAYNQ EYHISPEQSI QQHFPAEHNN VQIQQQAYYQ  240
SQYHEQCQYS DEEKYLLQQI KQEQYYYNQQ NCFLPGQGNQ ELYYNNDAQQ QIFSLPEHQC  300
SQEQYCHHDD QQDCVLPEQH GQELHGYNNE EQGYLLPPEP IGKEEQAFFV GGEPQHEKQP  360
LTSTSQQVLL DHDGKLLPPV GVNGAVAIPP QDAAVASNDD DGGQATEAPA VKMTAEEKKW  420
FMEELLTEGC WSGPLLFDQP YYGSALKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047590.0AP004759.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0670E08.
GenBankAP0054900.0AP005490.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0049I01.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649258.10.0uncharacterized protein LOC107275324
TrEMBLA0A0E0CFH50.0A0A0E0CFH5_9ORYZ; Uncharacterized protein
STRINGOMERI02G04360.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.12e-09NAC domain containing protein 53