PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI02G03550.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 747aa MW: 78620.2 Da PI: 6.1442

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI02G03550.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.2	1.6e-28	508	559	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+++le+l+k+Fs+++kdAA++Lgvc+T++KriCRq+GI+RWP+Rki+++ OMERI02G03550.1 508 AEKSVTLEELQKHFSGSLKDAARSLGVCPTTMKRICRQHGIPRWPFRKISKV 559 5899*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.587	493	579	IPR003035	RWP-RK domain
Pfam	PF02042	2.8E-26	511	559	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.83E-19	634	706	No hit	No description
PROSITE profile	PS51745	15.715	639	735	IPR000270	PB1 domain
SMART	SM00666	1.5E-18	639	735	IPR000270	PB1 domain
CDD	cd06407	1.70E-35	640	722	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.2E-22	640	707	No hit	No description
Pfam	PF00564	6.6E-12	640	713	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 747 aa Download sequence Send to blast
MVVEVEADME RVVGDFNLLL QRGGAAGGSE GGGGGSPGTE EAAAVAVKQR IARALRLYKE 60 AAGDGGGGWM VQVWAPARDG ARRVLATRGQ PFVLASQCHR LFQYRTVSLT RVFPVGGAAA 120 ADEQGLPARA FDATAPEWTP NVQCYGSGEY ARISYALIYD IQGSLALPIL DPDDASSPLA 180 VLELVTTAPL LRVSGEVANL CNALQAVSLR GAGICNRAAE AVSLRGAGIC NRAAECCSHA 240 VNQIVHRDAT RAAMAEVSEL LTTVCEAHKL PLAQTWVRCR SCGGGGEDTE KAALTTAGAP 300 FHLAAGADAR GFRDACVEHH LQRGQGLVGT AARAPGGGRL CADVARCSKD DYPLAHYAGM 360 YGLAGCLVLR AELSAAAMAD AAAAATAGDE EDCVVLELFL PPDCTGVAEQ KAAVDAVSAT 420 IKQCSGNLKA IVISNLDDLF LDTMADGDHQ LRHEMDDLGD DQRCSDEEDL QLLENTNIGE 480 LNIHNADQIR NEDPTSQVGK NKTKRVKAEK SVTLEELQKH FSGSLKDAAR SLGVCPTTMK 540 RICRQHGIPR WPFRKISKVN RSLDKMKRVM ESVNCSPSPP VAMPAHPALL LPPPPPPPPR 600 PCLSSTVGDT SSHGSCQAPP SHAKTALRKP PRCGNGDGVV TIKASHRGDI IRFRVPCSAG 660 VAAVKAEVAK RLSLDAGAFD VKYLDDDHEW VLLSCDADFQ ECLDVVQALP SMSVTARSGS 720 GAAAPVVVRL MVQEVADNIG SSCASSD

Sequence ? help Back to Top

Protein Sequence Length: 747 aa Download sequence Send to blast

MVVEVEADME RVVGDFNLLL QRGGAAGGSE GGGGGSPGTE EAAAVAVKQR IARALRLYKE  60
AAGDGGGGWM VQVWAPARDG ARRVLATRGQ PFVLASQCHR LFQYRTVSLT RVFPVGGAAA  120
ADEQGLPARA FDATAPEWTP NVQCYGSGEY ARISYALIYD IQGSLALPIL DPDDASSPLA  180
VLELVTTAPL LRVSGEVANL CNALQAVSLR GAGICNRAAE AVSLRGAGIC NRAAECCSHA  240
VNQIVHRDAT RAAMAEVSEL LTTVCEAHKL PLAQTWVRCR SCGGGGEDTE KAALTTAGAP  300
FHLAAGADAR GFRDACVEHH LQRGQGLVGT AARAPGGGRL CADVARCSKD DYPLAHYAGM  360
YGLAGCLVLR AELSAAAMAD AAAAATAGDE EDCVVLELFL PPDCTGVAEQ KAAVDAVSAT  420
IKQCSGNLKA IVISNLDDLF LDTMADGDHQ LRHEMDDLGD DQRCSDEEDL QLLENTNIGE  480
LNIHNADQIR NEDPTSQVGK NKTKRVKAEK SVTLEELQKH FSGSLKDAAR SLGVCPTTMK  540
RICRQHGIPR WPFRKISKVN RSLDKMKRVM ESVNCSPSPP VAMPAHPALL LPPPPPPPPR  600
PCLSSTVGDT SSHGSCQAPP SHAKTALRKP PRCGNGDGVV TIKASHRGDI IRFRVPCSAG  660
VAAVKAEVAK RLSLDAGAFD VKYLDDDHEW VLLSCDADFQ ECLDVVQALP SMSVTARSGS  720
GAAAPVVVRL MVQEVADNIG SSCASSD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012610	0.0	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627710.1	0.0	protein NLP3-like
TrEMBL	A0A0E0CF59	0.0	A0A0E0CF59_9ORYZ; Uncharacterized protein
STRING	OMERI02G03580.2	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6269	29	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-108	Nin-like family protein