PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G02950.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family BES1
Protein Properties Length: 799aa    MW: 88576.6 Da    PI: 6.4762
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G02950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822114.22.1e-35112329141
           DUF822  29 iyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspesslq.sslkssalaspvesysaspksssf 119
                      +++GLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r++s+pl   +++  g ++ +s+e+++  s+l+s+a+ +p++s++++++++++
  OMERI02G02950.1   1 MLSGLRQHGNFPLPARADMNDVLAALARAAGWTVHPDGTTFRASSQPLhtPTPQLPGIFHVNSVETPSFtSVLNSYAIGTPLDSQASMLQTDDS 94 
                      79*********************************************998999**************99899********************** PP

           DUF822 120 pspssldsislasa.......asllpvls 141
                      +spsslds+ +a++        ++ +v+s
  OMERI02G02950.1  95 LSPSSLDSVVVAEQsiknekyGNSDSVSS 123
                      ***********988666555544444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056876.9E-331127IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514452.41E-171230708IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.803.2E-172230677IPR013781Glycoside hydrolase, catalytic domain
PfamPF013733.2E-81255623IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-49268282IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-49289307IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-49402424IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-49475494IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-49509525IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-49526537IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-49544567IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.7E-49582604IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MLSGLRQHGN FPLPARADMN DVLAALARAA GWTVHPDGTT FRASSQPLHT PTPQLPGIFH  60
VNSVETPSFT SVLNSYAIGT PLDSQASMLQ TDDSLSPSSL DSVVVAEQSI KNEKYGNSDS  120
VSSLNCLENH QQVELEVVLP PPLAALLVCG STVVQLMGGS MAGSADGHPE EEQRERSGDG  180
RVGACAGAAA GAEPVPAAIH SSSSHVVSAV VAALGSLTRA SAALAGDYTR TPYIPVYASL  240
PMGIINSHCQ LIDPEGIRAE LMHLKSLNVD GVIVDCWWGI VEAWIPHKYE WSGYRDLFGI  300
IKEFKLKVQV VLSFHGSGET GSGGVSLPKW VMEIAQENQD VFFTDREGRR NMECLSWGID  360
KERVLRGRTG IEAYFDFMRS FHMEFRNLTE EGLISAIEIG LGVSGELKYP SCPERMGWRY  420
PGIGEFQCYD RYMQKNLRQA ALSRGHLFWA RGPDNAGYYN SRPHETGFFC DGGDYDSYYG  480
RFFLNWYSGI LIDHVDQVLS LATLAFDGVE TVVKIPSIYW WYRTASHAAE LTAGFYNPTN  540
RDGYSPVFRM LKKHSVILKF VCYGPEFTIQ ENNEAFADPE GLTWQVMNAA WDHGLSISVE  600
SALPCLDGEM YSQILDTAKP RNDPDRHHVS FFAYRQLPSF LLQRDVCFSE LGNFVKCMHD  660
GPLIKIVVRV RIITHQSRSS VLDVLMQRLT VLCIRGVSTY PIKIIRSRYL TTIIAERDRS  720
PTEADSVRHG PTWLALAAAE LAMARRAALD LGGARLRLLP PRPPPHRRRP PPPSLRFPPP  780
KSTESQRRWD VDGTSEEPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12223365911442Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200490.0AK120049.1 Oryza sativa Japonica Group cDNA clone:J013000A07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622759.10.0beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A0E0CEX00.0A0A0E0CEX0_9ORYZ; Beta-amylase
STRINGORUFI02G02360.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.20.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]