PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G01770.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 192aa    MW: 20609.6 Da    PI: 8.729
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G01770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.6e-161365255
              AP2  2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55
                     g +GVr++  +grW+AeIr+p  +g +  +r ++g+f ++  Aa a++aa  +++g
  OMERI02G01770.1 13 GLRGVRRRL-WGRWAAEIRVP--RGhRAaARLWIGTFPSPAAAALAYDAALYCFHG 65
                     579***877.**********9..455447************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.1141377IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-141469IPR016177DNA-binding domain
PRINTSPR003672.1E-61425IPR001471AP2/ERF domain
PfamPF008472.0E-111465IPR001471AP2/ERF domain
SMARTSM003805.0E-141583IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-191578IPR001471AP2/ERF domain
PRINTSPR003672.1E-63955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MVPPAAHAPK NLGLRGVRRR LWGRWAAEIR VPRGHRAAAR LWIGTFPSPA AAALAYDAAL  60
YCFHGGAPPG NRAFNFPHAP RLRIDDRRRH ALTPGHVRAI AERYAHDVGS VLFRPLPPPP  120
PPAAAAVPVF AAPAPPMVAA PAPAPANHAT DPYYCNEPDT TTDEDVMAAA DRLLSMDIEE  180
VADLIAIVQQ GE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1082080.0AK108208.1 Oryza sativa Japonica Group cDNA clone:002-140-D07, full insert sequence.
GenBankAP0038650.0AP003865.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1081_B12.
GenBankAP0055090.0AP005509.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1003_A09.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649451.12e-90ethylene-responsive transcription factor ERF015
TrEMBLA0A0E0CEE11e-131A0A0E0CEE1_9ORYZ; Uncharacterized protein
STRINGOMERI02G01810.11e-132(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555