PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G01640.2
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 394aa    MW: 41139.6 Da    PI: 6.1702
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G01640.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-09213260455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  OMERI02G01640.2 213 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 260
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-16207274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.63E-10207264No hitNo description
PROSITE profilePS5088815.301209259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-16209272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-6213260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-10215265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDGGRVGGDY ISSLLSSSPR LDFGVPVLDA VVAPGGGGGG GGGDCGLDKL CGDPGFAERA  60
ARLFSFNNGG GGVGQRYGGA GLFGMPPPAP GDFAGGGSRE ASSVSDPASS AMKDAAAANA  120
KKRKSAAAAA AAGKGKGKEP PVGEEKESDG KRCKTGNGEK ESSAKPKAEQ AGSDSSVEDG  180
GGQKQGKGKN ARPVEPPKDY VHVRARRGQA TDSHSLAERV RRERISQRMK VLQDLVPGCN  240
KVIGKALMLD EIINYVQSLQ RQVEFLSMKL ATVNPLDFSN LPTLLQKDMF QACGPSASSV  300
FSLESSNSAF PFAEQGDVFQ QFAQNSMESQ CTLNQLDLAL SQATNAAQYA FQDGTAGANL  360
QQRNFWEDDL QSVFHIENGQ SQENGVSAPN FHGW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0720410.0AK072041.1 Oryza sativa Japonica Group cDNA clone:J013105J01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648582.10.0transcription factor BHLH094-like
TrEMBLA0A0E0CEC40.0A0A0E0CEC4_9ORYZ; Uncharacterized protein
STRINGONIVA08G23980.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.23e-53bHLH family protein