PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMERI02G00890.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 546aa MW: 57373.4 Da PI: 4.3892 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.9 | 6.5e-12 | 284 | 327 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 e+Er+RR+++N + +Lr+l+P+ +K++ a+iL A++YI Lq OMERI02G00890.4 284 EAERKRRKKLNGHLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 327 89*********************7.....7***************9887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.15E-13 | 276 | 338 | No hit | No description |
PROSITE profile | PS50888 | 15.37 | 277 | 326 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.37E-18 | 278 | 349 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-15 | 283 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-14 | 284 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-9 | 284 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048657 | Biological Process | anther wall tapetum cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 546 aa Download sequence Send to blast |
MAGGDHLLMK NSNAAAATAA VNGGGTSLDA ALRPLVGSDG WDYCIYWRLS PDQRFLEMTG 60 FCCSSELEAQ VSALLDLPSS IPLDSSSIGM HAQALLSNQP IWQSSSVEEE EEAADGGGGA 120 KTRLLVPVAG GLMAEEQQMA ELVMAQCGGG GGGAGDDGGG QAWPPPETPG FQWDGGADAQ 180 RLMYGGSSLN LFDAAAADDD PFLGGGGDAV GDAAAAAGAW PYAGMAVSEP SVVAVQEQMQ 240 HAAGGGVAES GSEGRELHGG DPEDDGDGEG RSGGAKRQQC KNLEAERKRR KKLNGHLYKL 300 RSLVPNITKM DRASILGDAI DYIVGLQKQV KELQDELEDN HVHHKPPDVL IDHPPPASLV 360 GLDNDDASPP NSHQQQPPLA VAGSSSRRSN KDPAMADDKV GGGGGGGHRM EPQLEVRQVQ 420 GNELFVQVLW EHKPGGFVRL MDAMNALGLE VINVNVTTYK TLVLNVFRVM VRDNEVAVQA 480 DRVRDSLLEV TRETYPGVWP SPQEEDDAKF DGGQAAAAAA AAAGGEHYHD EVGGGYHQHL 540 HYLAFD |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 285 | 292 | ERKRRKKL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269|PubMed:17138695, ECO:0000269|PubMed:19825565, ECO:0000269|PubMed:23385589}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK106761 | 0.0 | AK106761.1 Oryza sativa Japonica Group cDNA clone:002-115-D12, full insert sequence. | |||
GenBank | AK119580 | 0.0 | AK119580.1 Oryza sativa Japonica Group cDNA clone:002-117-B12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625730.1 | 0.0 | transcription factor TDR | ||||
Refseq | XP_025878930.1 | 0.0 | transcription factor TDR | ||||
Refseq | XP_025878931.1 | 0.0 | transcription factor TDR | ||||
Swissprot | Q6YUS3 | 0.0 | TDR_ORYSJ; Transcription factor TDR | ||||
TrEMBL | A0A0E0CE09 | 0.0 | A0A0E0CE09_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI02G00950.1 | 0.0 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G16910.1 | 1e-50 | bHLH family protein |