PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI01G40580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 204aa MW: 22577.6 Da PI: 9.3206 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 59.2 | 1.4e-18 | 17 | 148 | 4 | 128 |
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.....tksgyWk..atgkdk 90 G+ F+Pt++el+ ++L+++++g +++ ++ e+d + + Pw+L ++ +++++e +fF r++++++ +r+ g W +t + + OMERI01G40580.1 17 GVGFEPTEDELMLHFLRPQLRGFAPRVAGAVVEADPCGAAPWELLAR-HGRREEGFFFWARARRKPSVRRTVAGcggggGGGGAWMhsSTKNGQ 109 999*********************9**999**************744.455668899999999998766666533444444899*843556667 PP NAM 91 evlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128 +v++ + + +++ fy +g+ + ++t W+m ey++ OMERI01G40580.1 110 SVTDLGVVVRWCRINYCFYvRGEMGQQRSTGWMMAEYEI 148 8888788999*********888999999*********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-31 | 5 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.962 | 14 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-11 | 17 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MGKEMNLIRE DEYGGGGVGF EPTEDELMLH FLRPQLRGFA PRVAGAVVEA DPCGAAPWEL 60 LARHGRREEG FFFWARARRK PSVRRTVAGC GGGGGGGGAW MHSSTKNGQS VTDLGVVVRW 120 CRINYCFYVR GEMGQQRSTG WMMAEYEITD PRCYRRADDG EEDDFWVLCH VRKSSRPQAA 180 KISPAKPARR RKPAAAAAAD VRAA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071060 | 0.0 | AK071060.1 Oryza sativa Japonica Group cDNA clone:J023080K20, full insert sequence. | |||
GenBank | AP003687 | 0.0 | AP003687.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0660F12. | |||
GenBank | AP004073 | 0.0 | AP004073.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0614D08. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641921.1 | 1e-147 | NAC domain-containing protein 48-like isoform X1 | ||||
Refseq | XP_015641928.1 | 1e-147 | NAC domain-containing protein 48-like isoform X2 | ||||
TrEMBL | A0A0E0CCW8 | 1e-147 | A0A0E0CCW8_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G40140.1 | 1e-148 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13761 | 25 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 3e-11 | NAC domain containing protein 47 |