PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI01G39520.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Trihelix | ||||||||
Protein Properties | Length: 301aa MW: 31775.4 Da PI: 6.6855 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 76.6 | 3.8e-24 | 23 | 95 | 1 | 72 |
trihelix 1 rWtkqevlaLiearremeerlrrgklk.kplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 rWt++e+l+L++arr me+r rr+ + +W++vs+++r++g+er+p qC+++w nl+++ kki ++ek+ + OMERI01G39520.4 23 RWTRHETLVLLQARRAMEHRGRRSPQPvRLKWAAVSAYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWEKNLA 95 8**********************97764889**************************************9864 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.98 | 16 | 81 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 4.22E-5 | 20 | 94 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 3.1E-10 | 23 | 91 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010216 | Biological Process | maintenance of DNA methylation | ||||
GO:0051567 | Biological Process | histone H3-K9 methylation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005694 | Cellular Component | chromosome | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0008327 | Molecular Function | methyl-CpG binding | ||||
GO:0010385 | Molecular Function | double-stranded methylated DNA binding | ||||
GO:0010428 | Molecular Function | methyl-CpNpG binding | ||||
GO:0010429 | Molecular Function | methyl-CpNpN binding | ||||
GO:0042393 | Molecular Function | histone binding | ||||
GO:0046974 | Molecular Function | histone methyltransferase activity (H3-K9 specific) |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MSGAANATSP AAGAGTPRSR LPRWTRHETL VLLQARRAME HRGRRSPQPV RLKWAAVSAY 60 CRRHGVERGP MQCRKRWGNL SWDLKKIVAW EKNLAAAVVS GAGDNAVAAG EGEGEAPPPP 120 GLESFWDMRG EQRRARQLPS SFDREVYDAL VGGHDAAPPS DFGEDLADGD DVDADELPPP 180 PPPLMVMPIS ATVSAKRGGA ASDKNSTSQH DGGGGGGLKD SEATYGAGVG GEEGTTTATA 240 TATTTSIGRQ VIEALERGNR MLGDQLEAQR AAWDAEREQR AALLAAVDKL AGAVCRIADK 300 L |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629515.1 | 0.0 | trihelix transcription factor ASR3 | ||||
TrEMBL | A0A0E0CCG2 | 0.0 | A0A0E0CCG2_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM01G46800.1 | 1e-180 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 1e-32 | Trihelix family protein |