PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G39420.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 233aa    MW: 24819 Da    PI: 9.1621
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G39420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.85.6e-33201441128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratk.sgyWkatgkdkev 92 
                      lp GfrF+Ptdeel+ +yL++kv +++l++ +vi+ +d+ +++PwdLp    +++ e yfF+  +++   +g   +ra    g W+a+gk+k v
  OMERI01G39420.1  20 LPIGFRFRPTDEELLLHYLRRKVMSRPLPA-DVIPVADLARLHPWDLP---GEGDGERYFFHLPATSCWrRGGGGSRAGGgGGAWRASGKEKLV 109
                      699***************************.99***************...346778999998887776258888886443899********** PP

              NAM  93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++   +++ vg k+tLvf+   ++ g +tdW mheyrl
  OMERI01G39420.1 110 VAPrcGKRPVGAKRTLVFF---RRGGARTDWAMHEYRL 144
                      *99888999**********...567889********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-4415173IPR003441NAC domain
PROSITE profilePS5100544.37120173IPR003441NAC domain
PfamPF023651.1E-2021144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MAAEAASGGG GGCRMLQAGL PIGFRFRPTD EELLLHYLRR KVMSRPLPAD VIPVADLARL  60
HPWDLPGEGD GERYFFHLPA TSCWRRGGGG SRAGGGGGAW RASGKEKLVV APRCGKRPVG  120
AKRTLVFFRR GGARTDWAMH EYRLLPAAAA DDQTSSHPPE ANDGWVVCRV FKKTTTPAHR  180
RSPPSIRGAP RRRAAAADDD MPSSPSSCVT DGGDVGEEGE ESSSCSVVAS NCP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-261517612168NO APICAL MERISTEM PROTEIN
1ut4_B2e-261517612168NO APICAL MERISTEM PROTEIN
1ut7_A2e-261517612168NO APICAL MERISTEM PROTEIN
1ut7_B2e-261517612168NO APICAL MERISTEM PROTEIN
3swm_A2e-261517615171NAC domain-containing protein 19
3swm_B2e-261517615171NAC domain-containing protein 19
3swm_C2e-261517615171NAC domain-containing protein 19
3swm_D2e-261517615171NAC domain-containing protein 19
3swp_A2e-261517615171NAC domain-containing protein 19
3swp_B2e-261517615171NAC domain-containing protein 19
3swp_C2e-261517615171NAC domain-containing protein 19
3swp_D2e-261517615171NAC domain-containing protein 19
4dul_A2e-261517612168NAC domain-containing protein 19
4dul_B2e-261517612168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0674500.0AK067450.1 Oryza sativa Japonica Group cDNA clone:J013106M04, full insert sequence.
GenBankAK0684460.0AK068446.1 Oryza sativa Japonica Group cDNA clone:J013153H06, full insert sequence.
GenBankAK2889420.0AK288942.1 Oryza sativa Japonica Group cDNA, clone: J090083D07, full insert sequence.
GenBankCT8295910.0CT829591.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA017E23, full insert sequence.
GenBankCT8295920.0CT829592.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111B01, full insert sequence.
GenBankCU4067440.0CU406744.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109J05, full insert sequence.
GenBankGU1203510.0GU120351.1 Oryza sativa Japonica Group clone KCG153D01 NAC4 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627804.11e-102NAC domain-containing protein 83
TrEMBLA0A0E0CCE51e-166A0A0E0CCE5_9ORYZ; Uncharacterized protein
STRINGOMERI01G38920.11e-167(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-31NAC domain containing protein 83