PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G39250.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 725aa    MW: 81909 Da    PI: 6.8755
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G39250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1136.21e-4239130118
             CG-1  30 lktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                      ++++ + g+++L+nr+++ryfr+DGy+w+kkk+gkt+ E+he+LKv++v++l+cyYah+++n+tfqrr+yw+L+ ++++iv+vhy++v+
  OMERI01G39250.1   3 HHQQQQGGAWFLFNRRVLRYFRNDGYEWRKKKNGKTIAEAHEHLKVDNVDALNCYYAHADKNSTFQRRIYWMLDPAYDHIVFVHYRDVQ 91 
                      5788999*******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010761.2E-40191IPR005559CG-1 DNA-binding domain
PROSITE profilePS5143761.275196IPR005559CG-1 DNA-binding domain
PfamPF038592.9E-35490IPR005559CG-1 DNA-binding domain
CDDcd002042.25E-11364486No hitNo description
PfamPF136376.1E-10396448No hitNo description
SuperFamilySSF484031.06E-15398489IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.255399459IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.2E-16399491IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.541427459IPR002110Ankyrin repeat
SMARTSM002481.9E-4427456IPR002110Ankyrin repeat
SMARTSM000150.012588610IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.181589618IPR000048IQ motif, EF-hand binding site
SMARTSM000150.83611633IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.169612640IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MQHHQQQQGG AWFLFNRRVL RYFRNDGYEW RKKKNGKTIA EAHEHLKVDN VDALNCYYAH  60
ADKNSTFQRR IYWMLDPAYD HIVFVHYRDV QEGSISVSAL NDSSTSNQNG SGSRAEAQSS  120
PGLTSELFAP CLNSCSPGSA EEVSSQIMAI NNETNSVSQP DWVQHCNQAA LRKLKVQLSL  180
EDREDYDVDA KDIPSNSEPI TVYGIQNEEP GTCRNLADVF SGLEFSKENH PEETGLPFSS  240
TIDVLKNSDT WLEEDQIEAI LQSASMTVTE NQWFNIREVS PEWSYCSEST KVIIAGDFLR  300
DPSHGSWAIV FGDVKLLFDG HVSEQFLKFS LPFPNLECRL QVSSSEIMKG TSEQLNRDTA  360
VNCVMEVLLN NKFEEWLLSK YEQNSEGNHF LPRQYHGVIH TLAALGYNWA LKLLLNSGVL  420
VNYRDANGWT ALHWAARFGR EETVVLLLDA GAAAGALSDP TAQDPAAKTP ASVASAYGFK  480
GLSAYLSEAE LTAHLHSLES KENRSSGDQI SRVMDRISDT SAHAQSGSND QLALKESLGA  540
MRYAVQAAGR IQTAFRIFSF RKKQQAGLHN RDNHIISIRE VGVASRGMLE KAALSIQKNF  600
RCWKKRKEFL KIRKNVIKIQ ARVRAHQQHN KYKELLRSVG ILEKVMLRWY RKGVGLRGFH  660
PGAMAMPIDE EDEDDIAKVF RKQRVETALN EAVSRVSSII DSPVARQQYR RMLEMHKQNK  720
DDDEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0689320.0AK068932.1 Oryza sativa Japonica Group cDNA clone:J023002D02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816192.10.0calmodulin-binding transcription activator 4-like isoform X2
TrEMBLA0A0E0CCC50.0A0A0E0CCC5_9ORYZ; Uncharacterized protein
STRINGTRIUR3_22499-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94073440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.12e-77Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains