PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G39190.1
Organism
Oryza meridionalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 404aa    MW: 42035.6 Da    PI: 8.9325
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G39190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.52.5e-4088165278
                      -SSTT-----TT-.-HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlsea.keyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      C vegC+adls++ ++yhrrhkvCe+hsk++vv+v+g++qrfCqqCsrfh l efDeekrsCr+rL++hn+rrrk+q+
  OMERI01G39190.1  88 CSVEGCAADLSKCvRDYHRRHKVCEAHSKTAVVTVAGQQQRFCQQCSRFHLLGEFDEEKRSCRKRLDGHNKRRRKPQP 165
                      ***********9879************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.5E-3380150IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.48785163IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-3786168IPR004333Transcription factor, SBP-box
PfamPF031107.1E-2988162IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDWDAKMPSW DLGTVVGPSG GGGGGGGGGA LDLKLGAPTS WKTTTTVSAA SAAPAPVAAP  60
PPPSSSSAAG KRARAGQGQG QQAAVPACSV EGCAADLSKC VRDYHRRHKV CEAHSKTAVV  120
TVAGQQQRFC QQCSRFHLLG EFDEEKRSCR KRLDGHNKRR RKPQPDPLNP GNLFANHHGA  180
ARFTSYPQIF STAASMSPQE AKWPANVVKT EAADVFQEPY YHALHLNGAG AAAAASIFHH  240
GGSKARKHHF PFLTTDHGGD ASPLFGCQPF TITPSSESRS SSSSRHSNGK MFAHDGGLDN  300
CALSLLSDNP TPTAQITIPQ PLVAGGGGQY GGGGGGDVSL TGLSYVRMAG KDTSILAKSA  360
TTTATTPPTT TSAQLQYHGY YHHHVSADQG SSDAAIQALP FSSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-2778162184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145162KRSCRKRLDGHNKRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0625810.0AK062581.1 Oryza sativa Japonica Group cDNA clone:001-100-B10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611358.10.0squamosa promoter-binding-like protein 2
SwissprotQ0JGI10.0SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBLA0A0E0CCB70.0A0A0E0CCB7_9ORYZ; Uncharacterized protein
STRINGOMERI01G38680.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104563038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.19e-30SBP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]