PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI01G38820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 137aa MW: 14234.1 Da PI: 7.0571 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.3 | 3.8e-15 | 17 | 115 | 3 | 99 |
EE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 3 kvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 kvl+ps+ +k ++++ + a++ gg + + ++ ++ g++W+v++ + ++++ +l++GW eF+ a+gL +g fvv +++g OMERI01G38820.1 17 KVLMPSSFHK---MRISDELAAHLlgdgdgggGGA--TRRAARVVSPVGKVWDVEVGRdDDGDDGAFLGRGWAEFAAAHGLGVGWFVVVRHEG- 104 6777776665...5699999955599999974433..4568***************5545555669************************755. PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ l+vk+f++ OMERI01G38820.1 105 -GGVLTVKLFDT 115 .7778***9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 5.9E-6 | 15 | 116 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-15 | 16 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.1E-15 | 16 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.59E-12 | 17 | 114 | No hit | No description |
Pfam | PF02362 | 8.0E-12 | 17 | 115 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.996 | 60 | 116 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MPGDHAGAAA AKATQLKVLM PSSFHKMRIS DELAAHLLGD GDGGGGGATR RAARVVSPVG 60 KVWDVEVGRD DDGDDGAFLG RGWAEFAAAH GLGVGWFVVV RHEGGGVLTV KLFDTTCCLR 120 DFATRPAVVI AFTTSSR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012612 | 1e-117 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002447504.2 | 6e-42 | putative B3 domain-containing protein Os04g0346900 | ||||
Swissprot | Q7XS74 | 5e-51 | Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400 | ||||
TrEMBL | A0A0E0CC59 | 1e-91 | A0A0E0CC59_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G38270.1 | 2e-85 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |