PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G35430.3

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 267aa MW: 28238.2 Da PI: 6.8274

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G35430.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.4	2.1e-15	185	237	3	55
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 + +r++r++kNRe+A rsR+RK+a+i+eLe v +Le+eN ++ ke ee ++ OMERI01G35430.3 185 AMQRQKRMIKNRESAARSRERKQAYIAELESLVTQLEEENAKMFKEQEEQHQK 237 689*************************************9998877655444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.6E-8	183	247	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.657	185	249	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.4E-14	185	243	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.79E-20	187	237	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.5E-13	188	246	No hit	No description
SuperFamily	SSF57959	1.06E-10	188	235	No hit	No description
PROSITE pattern	PS00036	0	190	205	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MMASRVMASS SPSHTASDLA RFAAGRGGGG SAGLGSMNVE EILRGIYADM PTPALPLVGG 60 DRPMSPLPAP DVAAAPRTAE EVWKEITGAG VAAAAGVVPP ATAAAAAPAV VAAAGAGTGA 120 EMTLEDFLAR EGAVKEDEAV VTDPSASVAE GQMVMGFLNG AEVAGGVTGG RSRKRHLMDP 180 MDRAAMQRQK RMIKNRESAA RSRERKQAYI AELESLVTQL EEENAKMFKE QEEQHQKRLK 240 ELKEMVVPVI IRKTSARDLR RTNSMEW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK067919	0.0	AK067919.1 Oryza sativa Japonica Group cDNA clone:J013123H12, full insert sequence.
GenBank	GQ904238	0.0	GQ904238.1 Oryza sativa Japonica Group ABA responsive element binding factor 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612904.1	1e-142	bZIP transcription factor 12-like
Swissprot	Q0JHF1	1e-143	BZP12_ORYSJ; bZIP transcription factor 12
TrEMBL	A0A0E0CAT7	0.0	A0A0E0CAT7_9ORYZ; Uncharacterized protein
STRING	OMERI01G34900.1	0.0	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44080.1	4e-33	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]