PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G35090.1

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 255aa MW: 28211.4 Da PI: 5.0248

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G35090.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	129.9	1.9e-40	9	142	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvka...eekewyfFskrdkkyatgkrknratksgyWkat 86 +pGfrF Pt+eel+++yL++k++g + ++e+vi+ +diy+v+ +L + + e + w++F++r++++a+g r++r+t sgyWka OMERI01G35090.1 9 APGFRFYPTEEELICFYLRNKLDGLRDDIERVIPVFDIYSVDQLQLSEihhemlG--GggeEGEPWFYFCPRQEREARGGRPSRTTPSGYWKAA 100 59*************************99***********844555431..14335669************************* PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+ v+s++++ +g+kkt+vfy+grap+g+kt W m+eyr+ OMERI01G35090.1 101 GTPGVVYSADRRPIGMKKTMVFYRGRAPSGTKTAWKMNEYRA 142 **************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	42.894	8	180	IPR003441	NAC domain
SuperFamily	SSF101941	4.32E-44	9	179	IPR003441	NAC domain
Pfam	PF02365	1.0E-23	10	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MADGGGRRAP GFRFYPTEEE LICFYLRNKL DGLRDDIERV IPVFDIYSVD QLQLSEIHHE 60 MLGGGGEEGE PWFYFCPRQE REARGGRPSR TTPSGYWKAA GTPGVVYSAD RRPIGMKKTM 120 VFYRGRAPSG TKTAWKMNEY RAFHYPDASA SAASASAAAP PSQLPPQLRS EFSLCRLYTR 180 SGGIRQFDRR PLAGGGDENP GPSMAAAAAS PEENDGSGSS MQQLELMDQG GAVDPDWDQW 240 DDLATLTALL YWPRD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-26	10	141	19	141	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-26	10	141	19	141	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-26	10	141	19	141	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-26	10	141	19	141	NO APICAL MERISTEM PROTEIN
4dul_A	1e-26	10	141	19	141	NAC domain-containing protein 19
4dul_B	1e-26	10	141	19	141	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071274	0.0	AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015632691.1	1e-165	NAC domain-containing protein 90 isoform X2
Swissprot	Q9FMR3	2e-63	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A0E0CAN4	0.0	A0A0E0CAN4_9ORYZ; Uncharacterized protein
STRING	OMERI01G34600.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	7e-61	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]