PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G34960.5

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 503aa MW: 55860.5 Da PI: 7.0232

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G34960.5	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.5	9e-11	192	222	4	34
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 k err+++NReAAr+sR+RKka++++Le+ OMERI01G34960.5 192 AKTERRLAQNREAARKSRLRKKAYVQNLETS 222 799*************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.3E-7	189	265	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.278	191	235	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.2E-8	192	223	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.49E-20	193	245	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.4E-7	193	237	No hit	No description
SuperFamily	SSF57959	6.4E-7	193	236	No hit	No description
PROSITE pattern	PS00036	0	196	211	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.5E-29	274	348	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MSSVRYCLGR DFQPAAAAAA YFGELEEALI HGANAGGVVD PGMIRADVHS KSAAAAATAG 60 YLAARPPTLE IFPSWPMRQQ QQLHSGNSQS VGSTTDSSSA QNTMPQMELV SPASIRASSE 120 HQHQQQQQQP GQEVMMVTTD DYSYKPGLAA ASPSFQQQHQ LQHHQQQQLH GGGDHDKRKH 180 GSTRKDGKSV DAKTERRLAQ NREAARKSRL RKKAYVQNLE TSRVRLQQIE QELQRARSQG 240 LFLGGCSAAG DMSSGAAMFD MEYARWLDDD SKRLTDLRGG LQAHLLDTNL GLIVEECMQH 300 YDELFQLKAA LAHSDVFHLL TGTWATPAER CFLWMGGFRP SDLLKILIQQ LDPLTEQQML 360 GIYNLQQSSE QAEEALAQGL QQLHQSLADT VAAGTLNDGP GVPNYMSLMA IALDKLASLE 420 SFYQQADNLR QQTLHQLRRI LTTRQAARCF LSIGEYYRRL RALSNLWSSR PRENFIGTES 480 VSPTGTELQP MHNQPQQNQY SGF

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MSSVRYCLGR DFQPAAAAAA YFGELEEALI HGANAGGVVD PGMIRADVHS KSAAAAATAG  60
YLAARPPTLE IFPSWPMRQQ QQLHSGNSQS VGSTTDSSSA QNTMPQMELV SPASIRASSE  120
HQHQQQQQQP GQEVMMVTTD DYSYKPGLAA ASPSFQQQHQ LQHHQQQQLH GGGDHDKRKH  180
GSTRKDGKSV DAKTERRLAQ NREAARKSRL RKKAYVQNLE TSRVRLQQIE QELQRARSQG  240
LFLGGCSAAG DMSSGAAMFD MEYARWLDDD SKRLTDLRGG LQAHLLDTNL GLIVEECMQH  300
YDELFQLKAA LAHSDVFHLL TGTWATPAER CFLWMGGFRP SDLLKILIQQ LDPLTEQQML  360
GIYNLQQSSE QAEEALAQGL QQLHQSLADT VAAGTLNDGP GVPNYMSLMA IALDKLASLE  420
SFYQQADNLR QQTLHQLRRI LTTRQAARCF LSIGEYYRRL RALSNLWSSR PRENFIGTES  480
VSPTGTELQP MHNQPQQNQY SGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250\|UniProtKB:Q7X993, ECO:0000269\|PubMed:22353606}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101338	0.0	AK101338.1 Oryza sativa Japonica Group cDNA clone:J033034J12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616943.1	0.0	transcription factor LG2 isoform X2
Swissprot	Q5N7C7	0.0	LG2_ORYSJ; Transcription factor LG2
TrEMBL	A0A0E0CAL5	0.0	A0A0E0CAL5_9ORYZ; Uncharacterized protein
STRING	OS01T0859500-01	0.0	(Oryza sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-121	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]