PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G34960.4

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 955aa MW: 106542 Da PI: 6.334

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G34960.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.9	3.3e-11	643	673	3	33
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee 33 +k err+++NReAAr+sR+RKka++++Le+ OMERI01G34960.4 643 HDKTERRLAQNREAARKSRLRKKAYVQNLET 673 589**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF81383	7.59E-7	2	50	IPR001810	F-box domain
Gene3D	G3DSA:3.80.10.10	2.6E-24	2	41	IPR032675	Leucine-rich repeat domain, L domain-like
Pfam	PF12937	4.3E-6	2	39	IPR001810	F-box domain
SMART	SM00256	3.1E-6	4	47	IPR001810	F-box domain
Gene3D	G3DSA:3.80.10.10	2.6E-24	102	379	IPR032675	Leucine-rich repeat domain, L domain-like
SuperFamily	SSF52047	4.32E-18	113	379	No hit	No description
SMART	SM00338	7.1E-7	641	717	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.3E-8	642	687	No hit	No description
PROSITE profile	PS50217	9.105	643	687	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.29E-6	644	688	No hit	No description
Pfam	PF00170	4.6E-8	644	675	IPR004827	Basic-leucine zipper domain
CDD	cd14708	4.38E-23	645	697	No hit	No description
PROSITE pattern	PS00036	0	648	663	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.5E-29	726	800	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 955 aa Download sequence Send to blast
MEHLPVEVIG NILAHLSAAR DVMVASGVCR KWRTACRKHL HSLSFNSDDF PRDMTTRQLE 60 IVITQTIFQT MGLQCLSIHI DSTHEFSAAP VIAWLMYTRE TLRSLSYNVR TNPNVNILEK 120 CGRQKLEVLD LDHNTITGVE PSYQRFTCLK SLSLRHVSIS ALDLSLLVAA CPKIESLALD 180 FLEVVTSDPQ STMELTSHTL KSLFAKSVGV DKIILDTDNL EVLNLNALNL DLFELIGKGT 240 LKHLKIDDVS VTHMDIGEST DHLEAVDVSN FTIVRPKLYS MISRASNLRM LRFWGVVFDD 300 EDEIVDSETI AVSFPLLRHL SLSYELRDGL LHYSLQGSSP LENVSVLELG WTVISEHFGP 360 WVFGMIERCP NLKKLVIHGV LSEAKTREER QMLASFTSFI VCLMRKYVHV DNIFHERIKS 420 NYGSVELVVI MVQGDESSWR MAASTHHERA IPLNQALAYG VQAHASPSVA AAPPASFLDF 480 QPAAAAAAYF GELEEALIHG ANAGGVVDPG MIRADVHSKS AAAAATAGYL AARPPTLEIF 540 PSWPMRQQQQ LHSGNSQSVG STTDSSSAQN TMPQMELVSP ASIRASSEHQ HQQQQQQPGQ 600 EVMMVTTDDY SYKPGLAAAS PSFQQQHQLQ HHQQQQLHGG GDHDKTERRL AQNREAARKS 660 RLRKKAYVQN LETSRVRLQQ IEQELQRARS QGLFLGGCSA AGDMSSGAAM FDMEYARWLD 720 DDSKRLTDLR GGLQAHLLDT NLGLIVEECM QHYDELFQLK AALAHSDVFH LLTGTWATPA 780 ERCFLWMGGF RPSDLLKILI QQLDPLTEQQ MLGIYNLQQS SEQAEEALAQ GLQQLHQSLA 840 DTVAAGTLND GPGVPNYMSL MAIALDKLAS LESFYQQADN LRQQTLHQLR RILTTRQAAR 900 CFLSIGEYYR RLRALSNLWS SRPRENFIGT ESVSPTGTEL QPMHNQPQQN QYSGF

Sequence ? help Back to Top

Protein Sequence Length: 955 aa Download sequence Send to blast

MEHLPVEVIG NILAHLSAAR DVMVASGVCR KWRTACRKHL HSLSFNSDDF PRDMTTRQLE  60
IVITQTIFQT MGLQCLSIHI DSTHEFSAAP VIAWLMYTRE TLRSLSYNVR TNPNVNILEK  120
CGRQKLEVLD LDHNTITGVE PSYQRFTCLK SLSLRHVSIS ALDLSLLVAA CPKIESLALD  180
FLEVVTSDPQ STMELTSHTL KSLFAKSVGV DKIILDTDNL EVLNLNALNL DLFELIGKGT  240
LKHLKIDDVS VTHMDIGEST DHLEAVDVSN FTIVRPKLYS MISRASNLRM LRFWGVVFDD  300
EDEIVDSETI AVSFPLLRHL SLSYELRDGL LHYSLQGSSP LENVSVLELG WTVISEHFGP  360
WVFGMIERCP NLKKLVIHGV LSEAKTREER QMLASFTSFI VCLMRKYVHV DNIFHERIKS  420
NYGSVELVVI MVQGDESSWR MAASTHHERA IPLNQALAYG VQAHASPSVA AAPPASFLDF  480
QPAAAAAAYF GELEEALIHG ANAGGVVDPG MIRADVHSKS AAAAATAGYL AARPPTLEIF  540
PSWPMRQQQQ LHSGNSQSVG STTDSSSAQN TMPQMELVSP ASIRASSEHQ HQQQQQQPGQ  600
EVMMVTTDDY SYKPGLAAAS PSFQQQHQLQ HHQQQQLHGG GDHDKTERRL AQNREAARKS  660
RLRKKAYVQN LETSRVRLQQ IEQELQRARS QGLFLGGCSA AGDMSSGAAM FDMEYARWLD  720
DDSKRLTDLR GGLQAHLLDT NLGLIVEECM QHYDELFQLK AALAHSDVFH LLTGTWATPA  780
ERCFLWMGGF RPSDLLKILI QQLDPLTEQQ MLGIYNLQQS SEQAEEALAQ GLQQLHQSLA  840
DTVAAGTLND GPGVPNYMSL MAIALDKLAS LESFYQQADN LRQQTLHQLR RILTTRQAAR  900
CFLSIGEYYR RLRALSNLWS SRPRENFIGT ESVSPTGTEL QPMHNQPQQN QYSGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250\|UniProtKB:Q7X993, ECO:0000269\|PubMed:22353606}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616952.1	0.0	transcription factor LG2 isoform X3
Swissprot	Q5N7C7	0.0	LG2_ORYSJ; Transcription factor LG2
TrEMBL	A0A0E0CAL4	0.0	A0A0E0CAL4_9ORYZ; Uncharacterized protein
STRING	OS01T0859500-01	0.0	(Oryza sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-113	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]