PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G34960.3

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 969aa MW: 107950 Da PI: 6.5084

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G34960.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.4	2e-10	658	687	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ OMERI01G34960.3 658 AKTERRLAQNREAARKSRLRKKAYVQNLET 687 799*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.80.10.10	5.8E-24	2	41	IPR032675	Leucine-rich repeat domain, L domain-like
SuperFamily	SSF81383	7.85E-7	2	50	IPR001810	F-box domain
Pfam	PF12937	4.4E-6	2	39	IPR001810	F-box domain
SMART	SM00256	3.1E-6	4	47	IPR001810	F-box domain
Gene3D	G3DSA:3.80.10.10	5.8E-24	102	379	IPR032675	Leucine-rich repeat domain, L domain-like
SuperFamily	SSF52047	3.88E-18	107	380	No hit	No description
SMART	SM00338	3.3E-7	655	731	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.278	657	701	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.8E-7	658	689	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.2E-7	659	703	No hit	No description
SuperFamily	SSF57959	1.48E-6	659	702	No hit	No description
CDD	cd14708	5.09E-23	659	711	No hit	No description
PROSITE pattern	PS00036	0	662	677	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.6E-29	740	814	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 969 aa Download sequence Send to blast
MEHLPVEVIG NILAHLSAAR DVMVASGVCR KWRTACRKHL HSLSFNSDDF PRDMTTRQLE 60 IVITQTIFQT MGLQCLSIHI DSTHEFSAAP VIAWLMYTRE TLRSLSYNVR TNPNVNILEK 120 CGRQKLEVLD LDHNTITGVE PSYQRFTCLK SLSLRHVSIS ALDLSLLVAA CPKIESLALD 180 FLEVVTSDPQ STMELTSHTL KSLFAKSVGV DKIILDTDNL EVLNLNALNL DLFELIGKGT 240 LKHLKIDDVS VTHMDIGEST DHLEAVDVSN FTIVRPKLYS MISRASNLRM LRFWGVVFDD 300 EDEIVDSETI AVSFPLLRHL SLSYELRDGL LHYSLQGSSP LENVSVLELG WTVISEHFGP 360 WVFGMIERCP NLKKLVIHGV LSEAKTREER QMLASFTSFI VCLMRKYVHV DICFSSNFTK 420 ACVELVVIMV QGDESSWRMA ASTHHERAIP LNQALAYGVQ AHASPSVAAA PPASFLDFQP 480 AAAAAAYFGE LEEALIHGAN AGGVVDPGMI RADVHSKSAA AAATAGYLAA RPPTLEIFPS 540 WPMRQQQQLH SGNSQSVGST TDSSSAQNTM PQMELVSPAS IRASSEHQHQ QQQQQPGQEV 600 MMVTTDDYSY KPGLAAASPS FQQQHQLQHH QQQQLHGGGD HDKRKHGSTR KDGKSVDAKT 660 ERRLAQNREA ARKSRLRKKA YVQNLETSRV RLQQIEQELQ RARSQGLFLG GCSAAGDMSS 720 GAAMFDMEYA RWLDDDSKRL TDLRGGLQAH LLDTNLGLIV EECMQHYDEL FQLKAALAHS 780 DVFHLLTGTW ATPAERCFLW MGGFRPSDLL KILIQQLDPL TEQQMLGIYN LQQSSEQAEE 840 ALAQGLQQLH QSLADTVAAG TLNDGPGVPN YMSLMAIALD KLASLESFYQ QADNLRQQTL 900 HQLRRILTTR QAARCFLSIG EYYRRLRALS NLWSSRPREN FIGTESVSPT GTELQPMHNQ 960 PQQNQYSGF

Sequence ? help Back to Top

Protein Sequence Length: 969 aa Download sequence Send to blast

MEHLPVEVIG NILAHLSAAR DVMVASGVCR KWRTACRKHL HSLSFNSDDF PRDMTTRQLE  60
IVITQTIFQT MGLQCLSIHI DSTHEFSAAP VIAWLMYTRE TLRSLSYNVR TNPNVNILEK  120
CGRQKLEVLD LDHNTITGVE PSYQRFTCLK SLSLRHVSIS ALDLSLLVAA CPKIESLALD  180
FLEVVTSDPQ STMELTSHTL KSLFAKSVGV DKIILDTDNL EVLNLNALNL DLFELIGKGT  240
LKHLKIDDVS VTHMDIGEST DHLEAVDVSN FTIVRPKLYS MISRASNLRM LRFWGVVFDD  300
EDEIVDSETI AVSFPLLRHL SLSYELRDGL LHYSLQGSSP LENVSVLELG WTVISEHFGP  360
WVFGMIERCP NLKKLVIHGV LSEAKTREER QMLASFTSFI VCLMRKYVHV DICFSSNFTK  420
ACVELVVIMV QGDESSWRMA ASTHHERAIP LNQALAYGVQ AHASPSVAAA PPASFLDFQP  480
AAAAAAYFGE LEEALIHGAN AGGVVDPGMI RADVHSKSAA AAATAGYLAA RPPTLEIFPS  540
WPMRQQQQLH SGNSQSVGST TDSSSAQNTM PQMELVSPAS IRASSEHQHQ QQQQQPGQEV  600
MMVTTDDYSY KPGLAAASPS FQQQHQLQHH QQQQLHGGGD HDKRKHGSTR KDGKSVDAKT  660
ERRLAQNREA ARKSRLRKKA YVQNLETSRV RLQQIEQELQ RARSQGLFLG GCSAAGDMSS  720
GAAMFDMEYA RWLDDDSKRL TDLRGGLQAH LLDTNLGLIV EECMQHYDEL FQLKAALAHS  780
DVFHLLTGTW ATPAERCFLW MGGFRPSDLL KILIQQLDPL TEQQMLGIYN LQQSSEQAEE  840
ALAQGLQQLH QSLADTVAAG TLNDGPGVPN YMSLMAIALD KLASLESFYQ QADNLRQQTL  900
HQLRRILTTR QAARCFLSIG EYYRRLRALS NLWSSRPREN FIGTESVSPT GTELQPMHNQ  960
PQQNQYSGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250\|UniProtKB:Q7X993, ECO:0000269\|PubMed:22353606}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101338	0.0	AK101338.1 Oryza sativa Japonica Group cDNA clone:J033034J12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616943.1	0.0	transcription factor LG2 isoform X2
Swissprot	Q5N7C7	0.0	LG2_ORYSJ; Transcription factor LG2
TrEMBL	A0A0E0CAL3	0.0	A0A0E0CAL3_9ORYZ; Uncharacterized protein
STRING	OS01T0859500-01	0.0	(Oryza sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-115	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]