PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMERI01G34960.2

Organism

Oryza meridionalis

Taxonomic ID

40149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 971aa MW: 108294 Da PI: 6.5304

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMERI01G34960.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.4	2e-10	660	689	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ OMERI01G34960.2 660 AKTERRLAQNREAARKSRLRKKAYVQNLET 689 799*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF81383	7.85E-7	2	50	IPR001810	F-box domain
Gene3D	G3DSA:3.80.10.10	2.8E-24	2	41	IPR032675	Leucine-rich repeat domain, L domain-like
Pfam	PF12937	4.4E-6	2	39	IPR001810	F-box domain
SMART	SM00256	3.1E-6	4	47	IPR001810	F-box domain
Gene3D	G3DSA:3.80.10.10	2.8E-24	102	379	IPR032675	Leucine-rich repeat domain, L domain-like
SuperFamily	SSF52047	3.92E-18	111	379	No hit	No description
SMART	SM00338	3.3E-7	657	733	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.278	659	703	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.8E-7	660	691	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.2E-7	661	705	No hit	No description
CDD	cd14708	6.97E-23	661	713	No hit	No description
SuperFamily	SSF57959	1.48E-6	661	704	No hit	No description
PROSITE pattern	PS00036	0	664	679	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.6E-29	742	816	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 971 aa Download sequence Send to blast
MEHLPVEVIG NILAHLSAAR DVMVASGVCR KWRTACRKHL HSLSFNSDDF PRDMTTRQLE 60 IVITQTIFQT MGLQCLSIHI DSTHEFSAAP VIAWLMYTRE TLRSLSYNVR TNPNVNILEK 120 CGRQKLEVLD LDHNTITGVE PSYQRFTCLK SLSLRHVSIS ALDLSLLVAA CPKIESLALD 180 FLEVVTSDPQ STMELTSHTL KSLFAKSVGV DKIILDTDNL EVLNLNALNL DLFELIGKGT 240 LKHLKIDDVS VTHMDIGEST DHLEAVDVSN FTIVRPKLYS MISRASNLRM LRFWGVVFDD 300 EDEIVDSETI AVSFPLLRHL SLSYELRDGL LHYSLQGSSP LENVSVLELG WTVISEHFGP 360 WVFGMIERCP NLKKLVIHGV LSEAKTREER QMLASFTSFI VCLMRKYVHV DNIFHERIKS 420 NYGSVELVVI MVQGDESSWR MAASTHHERA IPLNQALAYG VQAHASPSVA AAPPASFLDF 480 QPAAAAAAYF GELEEALIHG ANAGGVVDPG MIRADVHSKS AAAAATAGYL AARPPTLEIF 540 PSWPMRQQQQ LHSGNSQSVG STTDSSSAQN TMPQMELVSP ASIRASSEHQ HQQQQQQPGQ 600 EVMMVTTDDY SYKPGLAAAS PSFQQQHQLQ HHQQQQLHGG GDHDKRKHGS TRKDGKSVDA 660 KTERRLAQNR EAARKSRLRK KAYVQNLETS RVRLQQIEQE LQRARSQGLF LGGCSAAGDM 720 SSGAAMFDME YARWLDDDSK RLTDLRGGLQ AHLLDTNLGL IVEECMQHYD ELFQLKAALA 780 HSDVFHLLTG TWATPAERCF LWMGGFRPSD LLKILIQQLD PLTEQQMLGI YNLQQSSEQA 840 EEALAQGLQQ LHQSLADTVA AGTLNDGPGV PNYMSLMAIA LDKLASLESF YQQADNLRQQ 900 TLHQLRRILT TRQAARCFLS IGEYYRRLRA LSNLWSSRPR ENFIGTESVS PTGTELQPMH 960 NQPQQNQYSG F

Sequence ? help Back to Top

Protein Sequence Length: 971 aa Download sequence Send to blast

MEHLPVEVIG NILAHLSAAR DVMVASGVCR KWRTACRKHL HSLSFNSDDF PRDMTTRQLE  60
IVITQTIFQT MGLQCLSIHI DSTHEFSAAP VIAWLMYTRE TLRSLSYNVR TNPNVNILEK  120
CGRQKLEVLD LDHNTITGVE PSYQRFTCLK SLSLRHVSIS ALDLSLLVAA CPKIESLALD  180
FLEVVTSDPQ STMELTSHTL KSLFAKSVGV DKIILDTDNL EVLNLNALNL DLFELIGKGT  240
LKHLKIDDVS VTHMDIGEST DHLEAVDVSN FTIVRPKLYS MISRASNLRM LRFWGVVFDD  300
EDEIVDSETI AVSFPLLRHL SLSYELRDGL LHYSLQGSSP LENVSVLELG WTVISEHFGP  360
WVFGMIERCP NLKKLVIHGV LSEAKTREER QMLASFTSFI VCLMRKYVHV DNIFHERIKS  420
NYGSVELVVI MVQGDESSWR MAASTHHERA IPLNQALAYG VQAHASPSVA AAPPASFLDF  480
QPAAAAAAYF GELEEALIHG ANAGGVVDPG MIRADVHSKS AAAAATAGYL AARPPTLEIF  540
PSWPMRQQQQ LHSGNSQSVG STTDSSSAQN TMPQMELVSP ASIRASSEHQ HQQQQQQPGQ  600
EVMMVTTDDY SYKPGLAAAS PSFQQQHQLQ HHQQQQLHGG GDHDKRKHGS TRKDGKSVDA  660
KTERRLAQNR EAARKSRLRK KAYVQNLETS RVRLQQIEQE LQRARSQGLF LGGCSAAGDM  720
SSGAAMFDME YARWLDDDSK RLTDLRGGLQ AHLLDTNLGL IVEECMQHYD ELFQLKAALA  780
HSDVFHLLTG TWATPAERCF LWMGGFRPSD LLKILIQQLD PLTEQQMLGI YNLQQSSEQA  840
EEALAQGLQQ LHQSLADTVA AGTLNDGPGV PNYMSLMAIA LDKLASLESF YQQADNLRQQ  900
TLHQLRRILT TRQAARCFLS IGEYYRRLRA LSNLWSSRPR ENFIGTESVS PTGTELQPMH  960
NQPQQNQYSG F

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250\|UniProtKB:Q7X993, ECO:0000269\|PubMed:22353606}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101338	0.0	AK101338.1 Oryza sativa Japonica Group cDNA clone:J033034J12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616943.1	0.0	transcription factor LG2 isoform X2
Swissprot	Q5N7C7	0.0	LG2_ORYSJ; Transcription factor LG2
TrEMBL	A0A0E0CAL2	0.0	A0A0E0CAL2_9ORYZ; Uncharacterized protein
STRING	OS01T0859500-01	0.0	(Oryza sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-116	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]