PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI01G34110.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 281aa MW: 29757.4 Da PI: 8.1334 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 92.1 | 4.8e-29 | 128 | 181 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++WtpeLH+rFv+av++L G++ A+Pk+i++lm+v+gLt+e+v+SHLQkYRl OMERI01G34110.4 128 KARMVWTPELHHRFVQAVAHL-GEKGAVPKAIVRLMNVDGLTRENVASHLQKYRL 181 68*******************.9*******************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.13E-19 | 125 | 185 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-29 | 127 | 185 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.742 | 127 | 184 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 7.2E-25 | 128 | 181 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.1E-10 | 130 | 180 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003729 | Molecular Function | mRNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MSSARGGRPH DADAPLPSSS SSSSSSSSSS PSRRMVDTAA AAGDACGRVT EWETGLPAPG 60 EMTPVSHQLV PPALAAAFGI DLAAAGVLLP SPSVDSPVSH LFFPVDEDDD EDEEGEGEGG 120 NEGRCGKKAR MVWTPELHHR FVQAVAHLGE KGAVPKAIVR LMNVDGLTRE NVASHLQKYR 180 LYLKRTRVAA TPPPSPPPPP PPPPPLPPAM YVPCFAAKPP LDAANRSDSP PSRTSDATTK 240 QGDNAMRSRR RGAWAPAETN PQIRRRLRHA RAAVALTHPQ D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 3e-25 | 128 | 184 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is essential for the generation of the circadian clock oscillation. Binds to specific sites on CCA1 promoter leading to CCA1 activation (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16164597}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066659 | 0.0 | AK066659.1 Oryza sativa Japonica Group cDNA clone:J013068K17, full insert sequence. | |||
GenBank | AP003251 | 0.0 | AP003251.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0446B05. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878116.1 | 1e-120 | transcription factor PCL1-like | ||||
Swissprot | Q94DH3 | 3e-36 | PCL1_ORYSJ; Transcription factor PCL1 | ||||
TrEMBL | A0A0E0CA81 | 0.0 | A0A0E0CA81_9ORYZ; Uncharacterized protein | ||||
STRING | ORUFI01G40390.1 | 1e-120 | (Oryza rufipogon) | ||||
STRING | ONIVA01G41940.1 | 1e-120 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05090.1 | 4e-28 | G2-like family protein |