PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI01G32310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WOX | ||||||||
Protein Properties | Length: 250aa MW: 28293.6 Da PI: 6.6045 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.7 | 1.5e-21 | 90 | 150 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps++++++++++l +++e++V++WFqNrRa+ k+ OMERI01G32310.1 90 RQRWTPTPMQLQILENIFDQgNGTPSKQKIKDITAELsqhgQISETNVYNWFQNRRARSKR 150 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 104.4 | 7.3e-34 | 89 | 152 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq OMERI01G32310.1 89 ARQRWTPTPMQLQILENIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQ 152 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-17 | 85 | 155 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.835 | 86 | 151 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-14 | 88 | 155 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.8E-18 | 89 | 153 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.12E-13 | 90 | 152 | No hit | No description |
Pfam | PF00046 | 2.3E-19 | 90 | 150 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MEWDKAKASS GEAVDDRGGG GEGLGYVKVM TDEQMEVLRK QISIYATICE QLVEMHRALT 60 AQQDSIAGMR LGNLYCDPLM VPGGHKITAR QRWTPTPMQL QILENIFDQG NGTPSKQKIK 120 DITAELSQHG QISETNVYNW FQNRRARSKR KQAALPNNNA ESEAEADEES PTDKKPKSDR 180 PLHQNIAMRD HNSERISEMH HFDTEHEQIR RMMYASNDSS SRSSGSLGQM SFYDNVMSNP 240 STSYKHPCFI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 143 | 151 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00669 | PBM | Transfer from GRMZM2G038252 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068585 | 0.0 | AK068585.1 Oryza sativa Japonica Group cDNA clone:J013151P17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626455.1 | 1e-179 | WUSCHEL-related homeobox 8 | ||||
Swissprot | Q5QMM3 | 1e-180 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A0E0C9H4 | 0.0 | A0A0E0C9H4_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G31750.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3898 | 37 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 1e-71 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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