PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMERI01G32290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 320aa MW: 35454.1 Da PI: 8.611 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.4 | 2.9e-53 | 23 | 150 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelvv+yL++kv++++l++ +i+evd+yk++PwdLp+k+ ++kewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v OMERI01G32290.1 23 LPPGFRFHPTDEELVVHYLCRKVARQPLPV-PIIAEVDLYKLDPWDLPEKALFGRKEWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPVAP 115 79****************************.88***************8877899**************************************9 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k + ++vg+kk Lvfy+g+ap+g+ktdW+mheyrl OMERI01G32290.1 116 KgSARTVGIKKALVFYSGKAPRGVKTDWIMHEYRL 150 866778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-64 | 19 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.889 | 23 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.9E-28 | 24 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MEMAAAAAVG GSGRRDAEAE LNLPPGFRFH PTDEELVVHY LCRKVARQPL PVPIIAEVDL 60 YKLDPWDLPE KALFGRKEWY FFTPRDRKYP NGSRPNRAAG RGYWKATGAD KPVAPKGSAR 120 TVGIKKALVF YSGKAPRGVK TDWIMHEYRL ADADRAPGGK KGSSQKLDEW VLCRLYNKKN 180 NWEKVKLEQQ DVAAVAAAAP RHHHHQNGEV MDAAAADTMS DSFQTHDSDI DNASAGLRHG 240 GGGGGFGDVA PPRNGFVTVK EDNDWFTGLN FDELQPPYMM NLQHMQMQMV NPAAAGHDGG 300 YLQSISSPQM KMWQTILPPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-97 | 9 | 184 | 1 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028183 | 0.0 | AB028183.1 Oryza sativa mRNA for OsNAC4 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623706.1 | 0.0 | NAC domain-containing protein 68 | ||||
Swissprot | Q52QH4 | 0.0 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | A0A0E0C9H2 | 0.0 | A0A0E0C9H2_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G31730.1 | 0.0 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5389 | 37 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63790.1 | 6e-87 | NAC domain containing protein 102 |